Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E01
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    29   0.70 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   8.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   8.7  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 627 SSANTGFSFGKPGST 671
           SSA TGFSFGKP +T
Sbjct: 292 SSAGTGFSFGKPATT 306



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 621 FGSSANTGFSFGKPGSTT 674
           FGSS N  F+FGKP STT
Sbjct: 143 FGSS-NNSFNFGKPASTT 159



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +3

Query: 627 SSANTGFSFGKPGSTT 674
           ++AN+GFSFGKP +T+
Sbjct: 220 TTANSGFSFGKPATTS 235



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 600 TQAAAPAFGSSANTGFSFGKP 662
           ++ AA   GS+  TGFSFGKP
Sbjct: 255 SKPAASNTGSAPTTGFSFGKP 275



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 624 GSSANTGFSFGKP 662
           G++ N+GFSFGKP
Sbjct: 6   GNNQNSGFSFGKP 18


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
 Frame = +3

Query: 438 ERISQHPLEVSLHLLIRQLAVLLLGKQQIRMXDRPRICRLVQPPQHHRHSVHLXTQAAA- 614
           ++I    LE S+HL  + L +  L    ++     R+     PP++  +  H  T ++  
Sbjct: 564 QKILNESLEASVHLNTKNLELADLNNNLVKQIQH-RV-----PPENQSNLEHTITTSSKN 617

Query: 615 ------PAFGSSANTGFSFGKPGSTTGGL 683
                 P    S+N+G S G+PG  +  L
Sbjct: 618 TTSSINPLTAVSSNSGQSSGRPGPLSPNL 646


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 627 SSANTGFS-FGKPGSTTGGL 683
           ++ NTG S F KP +TTGGL
Sbjct: 564 NTTNTGGSLFNKPSTTTGGL 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,480
Number of Sequences: 5004
Number of extensions: 45401
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)