Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E01
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    31   1.7  
01_01_0485 - 3576989-3577173,3577476-3577795,3577895-3578178,357...    31   1.7  
09_02_0386 - 8371631-8372125,8373696-8374139                           29   6.9  
01_05_0303 + 20647654-20647830,20647981-20648067,20648549-206487...    29   6.9  
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207...    28   9.2  

>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 616 QHSVPVXIQVLASGSRDQRQVXFXXFNTYIWFLST 720
           QH + +    +A+ +++ R V +  FNTYIW+++T
Sbjct: 311 QHRI-IKADAIAAHAQNWRGVDYLVFNTYIWWMNT 344


>01_01_0485 -
           3576989-3577173,3577476-3577795,3577895-3578178,
           3579780-3580095,3580441-3580859
          Length = 507

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = +3

Query: 564 PPQHHRHSVHLXTQAAAPAFGSSANTGFSF----GKPGSTTGGL*XFQH 698
           PP HH H   L T+++  A    A T  S     GKP  TT  +    H
Sbjct: 92  PPHHHHHDAGLATRSSDAAVHRRARTASSMAPSTGKPAVTTDSVINLDH 140


>09_02_0386 - 8371631-8372125,8373696-8374139
          Length = 312

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 411 DGDENGEGAAFVVLAPNAKLPNTGALVVGLVKLNVALFSVLDPPNNGFEASPL 253
           DGD  GEG  +++LA     P   A  + L      LF++   P  G  ++ L
Sbjct: 183 DGDLGGEGDRWLLLARTPSKPTRLATAIELAAPPPILFAIATLPGRGASSTSL 235


>01_05_0303 +
           20647654-20647830,20647981-20648067,20648549-20648719,
           20649377-20649430,20650614-20650994
          Length = 289

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 471 VKPPKGVGLFAPKP 430
           +KPPKGVGL AP P
Sbjct: 241 LKPPKGVGLIAPLP 254


>03_02_0644 +
           10118790-10119559,10120252-10120432,10120526-10120725,
           10120834-10120992,10122375-10122741
          Length = 558

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 613 PQ-HSVPVXI---QVLASGSRDQRQVXFXXFNTYIWFLST 720
           PQ HSVP  +     +A  + +   V +  FNTYIW+L+T
Sbjct: 339 PQVHSVPDRVIQWHSIAKHAHNWLGVDYLIFNTYIWWLNT 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,105
Number of Sequences: 37544
Number of extensions: 342764
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)