Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E01
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    29   3.6  
AL032627-17|CAA21550.1|  103|Caenorhabditis elegans Hypothetical...    29   3.6  
U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   8.2  

>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 621  FGSSANTGFSFGKPGSTTG 677
            FG ++N GF+FG   STTG
Sbjct: 1125 FGGTSNNGFNFGASSSTTG 1143


>AL032627-17|CAA21550.1|  103|Caenorhabditis elegans Hypothetical
           protein Y41C4A.13 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 367 TKCKTAK---YWCTCCGTSEAECCF 302
           TKC T+    YW  CCG    ECCF
Sbjct: 47  TKCGTSSIFHYW-KCCGELNKECCF 70


>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 453 HPLEVSLHLLIRQLAVLLLGKQQIRMXDRPRICRLVQPPQHHRHSV 590
           HPLEV+L    +     L   + +   +RP++C L+ PP   R SV
Sbjct: 189 HPLEVNLPNRSKSHIGFL--PEIVVTEERPKLCLLLPPPNRRRKSV 232


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 355 TAKYWCTCCGTSEA-ECCFVFCIGSTK 278
           T  ++C CCG     +CC  FC G  K
Sbjct: 140 TGGFFCCCCGCMCCCQCCCNFCCGKYK 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,023,880
Number of Sequences: 27780
Number of extensions: 285287
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)