Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D23
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    43   7e-05
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    40   5e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    33   0.041
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    29   0.88 
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    28   2.0  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   4.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   8.2  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 27/38 (71%)
 Frame = +2

Query: 68  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 181
           I   EG  +FFKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 280 ILAKEGARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 24/86 (27%), Positives = 43/86 (50%)
 Frame = +1

Query: 415 QLLSYYIIYS*FKMKNDWFSLCDIT*FGLRLLCN*PHFSLVPEAKAELKIVQNFTLKEVY 594
           QLL YY IY  FK+  DW  L +     ++ + +  HF L+ +    L+I  N+  +E +
Sbjct: 550 QLLEYYDIYLKFKLLADWRLLTNPV-LQIQEISDYCHFKLLKKVNRNLQIKTNYPTQEFH 608

Query: 595 VLLSILNLSFVGIENFHFFIHSGSEF 672
           +L   + +  + I    +F+H  S +
Sbjct: 609 LLRPTIKI--LQISKHEYFLHFSSSY 632


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 65  TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEI 169
           T+A+ EG +A +KG    VLR G GG  +LV+++ +
Sbjct: 249 TVAREEGFTALYKGFVPKVLRLGPGGGILLVVFNSV 284


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 821 LKQ*CQLLGSAHQFNKSQMSALHNQLQNHMILHLIA 714
           L Q  QL G AH+FN+   + L N ++ H  L  +A
Sbjct: 85  LTQARQLCGDAHKFNEDAKTDLRNSIKQHQQLKELA 120


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 68  IAKTEGTSAFFKGAFSNVLRGTG-GAFVLVLYDEIKKV 178
           IAK EG   FF G  + +LR      F L+ Y+++++V
Sbjct: 165 IAKQEGMKTFFYGYRATILRDIPFSGFQLLFYEKLRQV 202


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 817 NNNVNY*VPHTNLTSHKCQRYIISFKIT*FYI**HNVYRSXKYTT*LCQTHS 662
           NN+ NY V       H+C++++ + K   +Y+    +++  KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 156  KTSTKAPPVPLRTLEKAPLKKAEVPSVLAMVAQPNN 49
            K S+KAPPVPL + +  P+    VPS    V  P +
Sbjct: 1016 KLSSKAPPVPLPSADAPPI---PVPSTAPPVPIPTS 1048


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 68  IAKTEGTSAFFKGAFSNVLR 127
           I KTEG + FF+G  SN+L+
Sbjct: 276 IYKTEGINGFFRGYSSNMLK 295


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 656 CMKKWKFSIPTKLKFKIDNKTYTSFN 579
           C   WK++I     F+IDN  +  FN
Sbjct: 334 CRDLWKWTIENPFGFQIDNYKWKLFN 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,917
Number of Sequences: 5004
Number of extensions: 61343
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)