Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D23
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019...    54   2e-07
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309     38   0.011
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887     37   0.019
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     34   0.17 
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627     31   1.2  
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    28   8.6  
07_01_0589 - 4381188-4381433,4381509-4381604,4381673-4381858,438...    28   8.6  

>05_06_0233 +
           26599068-26599466,26601214-26601829,26601871-26601917,
           26602101-26602268
          Length = 409

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +2

Query: 59  WATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 181
           W  I K EG  +F++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 296 WRKIYKVEGIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336


>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
          Length = 382

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +2

Query: 59  WATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIK 172
           ++ I K EG  + FKGA +N+LR   GA VL  YD+++
Sbjct: 332 FSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369


>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
          Length = 380

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 68  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 181
           I   EG  + FKGA +N+LR   GA VL  YD+++ V+
Sbjct: 333 IVAKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 68  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 175
           I  TEG    F+G  +N+L G  GA VL  YD++ +
Sbjct: 276 IVSTEGFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311


>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
          Length = 419

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 65  TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 181
           +I KTEG +  F+G F NV+R     A  L  +D  KK L
Sbjct: 179 SIMKTEGWTGLFRGNFVNVIRVAPSKAIELFAFDTAKKFL 218


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 761 ALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCMKK 645
           A HN L NH++ H     +  +K H+    ++LP    K
Sbjct: 87  AFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>07_01_0589 -
           4381188-4381433,4381509-4381604,4381673-4381858,
           4382704-4382825,4384127-4384189,4384777-4384930,
           4387354-4387381,4387784-4387837,4387950-4388294,
           4388382-4388638
          Length = 516

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 711 MCTEVXNTLHNYVKLTPAVYEKVEILNS 628
           MC ++   +H++  LTPA+Y  +E  NS
Sbjct: 464 MCGQLALCIHDFTFLTPALYRGLEASNS 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,896
Number of Sequences: 37544
Number of extensions: 339819
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)