Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D21
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   159   5e-40
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.51 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    26   8.2  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  159 bits (386), Expect = 5e-40
 Identities = 73/122 (59%), Positives = 100/122 (81%)
 Frame = +2

Query: 104 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 283
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 284 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 463
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 464 RR 469
           R+
Sbjct: 120 RK 121


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 391 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLTFVVSTYNLNFIVFANRH 242
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 47  LIGFSXSVLSRVVLAKSDRMKFNKQVTSSRRKNRKRH-FSAPSHIRRVLMSSPLSK 211
           L+GF  S L      ++  +  N QV     K  +RH FS+ SH    L  SPL K
Sbjct: 20  LVGFIWSPLKNTFSKRNSIL--NNQVCFEAIKYIQRHYFSSQSHHVTYLHQSPLEK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,814
Number of Sequences: 5004
Number of extensions: 48317
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)