Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D20
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    30   0.41 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   2.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   3.4  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   6.7  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   6.7  

>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           KKKKKK KE     KK  K + KK++K RK
Sbjct: 178 KKKKKKSKENDDAPKKDRKTR-KKEEKARK 206


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKK 201
           +K++KK  +K    KK+ K K +KKKK
Sbjct: 446 EKRRKKEAKKEKKEKKEKKEKKEKKKK 472



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKK 201
           ++KK+  KEK    +KK K + KKK +
Sbjct: 448 RRKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.4 bits (48), Expect(2) = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 213 TFSXFFFFFXFXFXFFF 163
           TF+   FF+ F F FFF
Sbjct: 68  TFTIEAFFYWFFFFFFF 84



 Score = 22.2 bits (45), Expect(2) = 3.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 150 FFFXFFFFFF 121
           ++F FFFFFF
Sbjct: 76  YWFFFFFFFF 85


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           KKK+ K K+K  + KK+      K++K +K
Sbjct: 199 KKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +3

Query: 123 KKKKKXKRKXNXXKKKXXKXXKKKKKXXKK 212
           K KKK         KK  K  KKKKK  KK
Sbjct: 176 KSKKKTSTGSALDPKKLEKITKKKKKEHKK 205


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 130 KKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           KK+ KE+    +KK + K KKK+K ++
Sbjct: 283 KKEEKERKKRAEKKEQQKEKKKEKEKE 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,074
Number of Sequences: 5004
Number of extensions: 20027
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)