Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D20
         (940 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    36   0.042
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      36   0.042
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    34   0.13 
U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical pr...    34   0.17 
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    32   0.51 
U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   0.90 
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical...    29   3.6  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z48009-2|CAA88077.1|  230|Caenorhabditis elegans Hypothetical pr...    29   4.8  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   8.4  
U23450-2|AAK31468.1|  302|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           KKK KK K+K    K+K K K K KKK +KS
Sbjct: 270 KKKSKKEKKKEKKEKRKNKDKKKDKKKNKKS 300



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           K KK+K KEK    K K K K KKK K  KS
Sbjct: 272 KSKKEKKKEKKEKRKNKDKKKDKKKNKKSKS 302


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           KKK KK K+K    K+K K K K KKK +KS
Sbjct: 270 KKKSKKEKKKEKKEKRKNKDKKKDKKKNKKS 300



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           K KK+K KEK    K K K K KKK K  KS
Sbjct: 272 KSKKEKKKEKKEKRKNKDKKKDKKKNKKSKS 302


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           KK+KKK K+     K+K K K KK KK RK+
Sbjct: 552 KKQKKKKKKSKKNNKRKGKKKSKKGKKGRKN 582


>U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical
           protein C27F2.1 protein.
          Length = 673

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKSXXXP 225
           KK+KKK KEK    KK+ K K +KK K  K    P
Sbjct: 15  KKEKKKDKEKSSKEKKEKKDKKEKKSKTIKPEPEP 49


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           K  KKK K+K    KKK   K KK KK +K+
Sbjct: 759 KNMKKKKKDKKEKEKKKKSKKSKKSKKEKKT 789



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           KKKKK  KEK    K K   K KK+KK ++
Sbjct: 762 KKKKKDKKEKEKKKKSKKSKKSKKEKKTKR 791



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           KKK KK KEK    KK  K K +KK K + S
Sbjct: 764 KKKDKKEKEKKKKSKKSKKSKKEKKTKRKHS 794


>U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical
           protein C13F10.7 protein.
          Length = 222

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 123 KKKKKXKRKXNXXKKKXXKXXKKKKKXXKK 212
           KK+KK K+K    KKK  K  KK++K  +K
Sbjct: 130 KKEKKLKKKAKKEKKKAKKLEKKERKKERK 159


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKSXXXPXLRXXXKK 249
           KKKK K  +K    KKK K + KK KK  K       R   +K
Sbjct: 292 KKKKVKKSKKSKKDKKKEKKEKKKSKKANKEKEERRARREQRK 334



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           +KKKKK K+   + K K K K K+KKK +K+
Sbjct: 290 QKKKKKVKKSKKSKKDKKKEK-KEKKKSKKA 319



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 123 KKKKKXKRKXNXXKKKXXKXXKKKKKXXKKXXQXXXXXAXKK 248
           KK KK K+K    KKK  K  K+K++   +  Q     A  K
Sbjct: 300 KKSKKDKKKEKKEKKKSKKANKEKEERRARREQRKKERAELK 341


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           KKKK+K  +K  + +KK K K KKK+K RK
Sbjct: 17  KKKKEKSTQKKNSLEKKNK-KDKKKQKERK 45


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           KKKK+K  +K  + +KK K K KKK+K RK
Sbjct: 17  KKKKEKSTQKKNSLEKKNK-KDKKKQKERK 45


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           +K KKK K+K    K++ K K  KK K +KS
Sbjct: 845 RKTKKKSKDKKEGRKEESKEKAHKKSKPKKS 875


>AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical
           protein Y87G2A.20 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 124 KKKKKXKEKXXTXKKKXKXKXKKKKKXRKS 213
           K KKK K+     KKK K K KK+K  +K+
Sbjct: 63  KAKKKTKKDAAKRKKKSKDKKKKQKAQKKA 92


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           K KKKK K+     KKK   K  KKKK  K
Sbjct: 255 KYKKKKNKKSKSKDKKKTASKKNKKKKKSK 284


>Z48009-2|CAA88077.1|  230|Caenorhabditis elegans Hypothetical
           protein AH6.3 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +2

Query: 122 KKKKKXKKKKXXXKKKXXKXXXKKKKXXEKVXXXXXXEXXEK 247
           KK  K KK +   KK       KKKK  EKV      E  +K
Sbjct: 88  KKSNKSKKPEKGSKKSKKSEKSKKKKTEEKVMSEDKPERPDK 129


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 121 KKKKKKXKEKXXTXKKKXKXKXKKKKKXRK 210
           K+K+K+ ++K    KKK K K + +K+ RK
Sbjct: 156 KRKEKERRKKEKREKKKRKEKKRLEKENRK 185


>U23450-2|AAK31468.1|  302|Caenorhabditis elegans Hypothetical
           protein C30B5.4 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 123 KKKKKXKRKXNXXKKKXXKXXKKKKKXXKK 212
           KK KK K+K    KK+  K  KK +K  KK
Sbjct: 176 KKIKKDKKKAKKEKKREKKRAKKIRKLEKK 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,256
Number of Sequences: 27780
Number of extensions: 141344
Number of successful extensions: 1066
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)