Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D19
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   6.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   6.5  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   8.5  

>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 178 FRSSAFDECNATLARQRANKRSSSLC 101
           F+   FDE    LAR RA KR  S+C
Sbjct: 46  FKPQTFDEFVHCLARVRAMKRLVSIC 71


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 56  ASCRRFVXPFSNLQNAQAAASLVGSLPRQCCIAFVKRAAPKAA 184
           AS RR++     L+ +   +S+ GSL R+  ++ + R A +++
Sbjct: 95  ASLRRYLEKHGKLEGSMKESSINGSLLRRSSVSTILRPASESS 137


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 280 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 393
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,314
Number of Sequences: 5004
Number of extensions: 32172
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)