Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D16
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    30   2.1  
07_03_1150 - 24375859-24376050,24376173-24376283,24376488-243766...    29   3.7  
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565...    29   4.8  
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726...    29   6.4  
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047           28   8.5  

>04_01_0438 -
           5723451-5723759,5723795-5723863,5724025-5724210,
           5724297-5724558,5724662-5724960,5725040-5725453,
           5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 616 RCPRCGATGDRAHTIKYCPQNSD 684
           R  RC    +R HT KYCP++ +
Sbjct: 303 RVKRCSKCDERGHTYKYCPKDKE 325


>07_03_1150 -
           24375859-24376050,24376173-24376283,24376488-24376655,
           24376850-24377451,24377546-24377648,24378461-24378610,
           24379918-24379956
          Length = 454

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 231 LKKDALQAVKLDPAVLEAQITVETRKIDGTDSTQT--QVSSQGSELPAEAVRVDFK 392
           LKK ALQ  KL+   L++Q  +E+ K+D T   Q      S G  + A+    D K
Sbjct: 163 LKKAALQIEKLENVNLDSQCEIESLKLDLTTLEQRLFDADSFGQHVSADKAIADNK 218


>11_01_0687 -
           5651002-5651453,5651535-5651951,5652621-5653338,
           5654106-5654417,5654482-5654814
          Length = 743

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 251 SC*TGSRGIGGTNNCGNEKNRWNRFYTNSSFFTRK 355
           +C  G  G GG N+     NRW R  +  S + R+
Sbjct: 445 TCSGGHTGFGGNNSARESNNRWVRSNSTVSIYFRR 479


>11_02_0004 +
           7260084-7260967,7261284-7263264,7263359-7263420,
           7263614-7263686
          Length = 999

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 280 SNTAGSSLTACKASFFKMHPLSKNSGCFLIYADADGTIXSKVCPTE 143
           +N A S  T CK   +KM PLS+ +   L      G   +  CP++
Sbjct: 332 NNIAESCCTPCKGFVYKMEPLSRQNSEILFVKRIFGA--NSTCPSQ 375


>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
          Length = 604

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 550 MTLTPHFSYRRRTQNVFVDRFASDEELRRKLEGTDTDQEXKERSAV 413
           +TLTP  S    T N        DE++   L+  DTD +  + +++
Sbjct: 52  ITLTPSLSVSSSTSNTIYQYDDGDEDIDSVLDDVDTDDDDVDEASL 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,679
Number of Sequences: 37544
Number of extensions: 438277
Number of successful extensions: 1093
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)