Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D16
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical pr...    45   8e-05
U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related ...    35   0.066
U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical pr...    35   0.066
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    34   0.15 
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    34   0.15 
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    31   1.4  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    30   1.9  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    30   1.9  
AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81476-5|CAB03916.1|  332|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z70754-3|CAA94773.1|  293|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    28   10.0 

>Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical
           protein R03D7.7 protein.
          Length = 311

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 19/29 (65%), Positives = 20/29 (68%)
 Frame = +1

Query: 580 RGRVKCPVLRGFRCPRCGATGDRAHTIKY 666
           RGRV CP LR   C  CGATGD AHT K+
Sbjct: 275 RGRVVCPKLRSMVCGICGATGDNAHTTKH 303


>U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related
           protein 2 protein.
          Length = 259

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 499 QRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFR-CPRCGATGDRAHTIKYCP 672
           +R + C +C+  G  + W  TH  K      KC  L     C  CGA G+  HT  YCP
Sbjct: 162 RREYGCGYCRSVGY-MRW-ETHTRK------KCDKLSSLAPCKICGARGEMNHTETYCP 212


>U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical
           protein T02G5.11 protein.
          Length = 184

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 499 QRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFR-CPRCGATGDRAHTIKYCP 672
           +R + C +C+  G  + W  TH  K      KC  L     C  CGA G+  HT  YCP
Sbjct: 87  RREYGCGYCRSVGY-MRW-ETHTRK------KCDKLSSLAPCKICGARGEMNHTETYCP 137


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 508 FECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDRAHTIKYCPQNSD 684
           + C   +   E VS   +H ++   G + C  ++  +C  C ATG++ H    CP+  +
Sbjct: 701 YRCEHYQLPAEEVS---SHNIRKDNGDLWCEHMKKIKCGHCEATGEQGHHPLICPKKKE 756


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 508 FECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDRAHTIKYCPQNSD 684
           + C   +   E VS   +H ++   G + C  ++  +C  C ATG++ H    CP+  +
Sbjct: 698 YRCEHYQLPAEEVS---SHNIRKDNGDLWCEHMKKIKCGHCEATGEQGHHPLICPKKKE 753


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
            protein B0511.12 protein.
          Length = 1634

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 660  NGVSSVPGGPTARAAEPSKYRALHPTAPILQSMRS 556
            +G+SS PGGP   +  P   RA     P+  S RS
Sbjct: 1299 SGISSAPGGPNPSSGAPGGLRAHFHVGPVPSSGRS 1333


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 502  RHFECAFCKKNGESVSWYRTHALKDGRGRV 591
            R F+CA+C K   SV  Y  H    G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 502  RHFECAFCKKNGESVSWYRTHALKDGRGRV 591
            R F+CA+C K   SV  Y  H    G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279


>AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical
           protein Y71G12B.18 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 394 K*CQCTRQHSSPXTPDQYQFLLIYVEALRQKRIGLQRH 507
           K CQ + +  SP  P Q QF+ +  + +R++R G+  +
Sbjct: 267 KFCQMSLEVHSPSEPQQIQFMELIKQIVREERYGMHNN 304


>Z81476-5|CAB03916.1|  332|Caenorhabditis elegans Hypothetical
           protein C25F9.8 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 502 RHFECAFCKKNGESVSWYRTHALKDGRGRVKC 597
           R FE   C KNG +  WY  +   +G+  V+C
Sbjct: 223 RRFEDLLCVKNGTTFDWYFGNLKLEGQITVEC 254


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 553 TMTLTPH-FSYRRRTQNVFVDRFASDEELRRKLEGTDTDQEXKERS 419
           T+  TP+ F    R Q  F ++   +EE+R KLE     ++ KER+
Sbjct: 461 TIGYTPNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERA 506


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 553 TMTLTPH-FSYRRRTQNVFVDRFASDEELRRKLEGTDTDQEXKERS 419
           T+  TP+ F    R Q  F ++   +EE+R KLE     ++ KER+
Sbjct: 461 TIGYTPNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERA 506


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 307 FLVSTVICA-SNTAGSSLTACKASFFKMHPLSKNSGCFLIYADADGTIXSK-VCPT 146
           F V+T++   +N   +  T    SFF+++P+S N    LI ++    I SK VC T
Sbjct: 264 FFVTTLLSPYTNMEINWQTGWLCSFFELYPISDNIAFMLIVSEYRNYIKSKLVCKT 319


>Z70754-3|CAA94773.1|  293|Caenorhabditis elegans Hypothetical
           protein F58E6.3 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 568 LKDGRGRVKCPVLRGFRCPRCGAT 639
           LK GRG  KC    GF   RC AT
Sbjct: 269 LKTGRGETKCLCASGFAGKRCQAT 292


>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 182 RRWYNXFKSLSYRMISYKRYLNIHCLVFKIYNF 84
           + + N +K  S + I Y+++LNIHC  FK + F
Sbjct: 108 KSYSNKYKMFSRKKI-YRKFLNIHC--FKFHKF 137


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 224 MHFEKRCLTSC*TGSRGIG---GTNNCGNEKNRWNRFY 328
           M  E RC+TS       I    GTNN  N+KN+ N+ +
Sbjct: 9   MDCEARCMTSMTADEENICFLVGTNNIKNDKNQVNKLF 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,547
Number of Sequences: 27780
Number of extensions: 396751
Number of successful extensions: 1134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)