Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D09
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 580 PPPPPPP 600
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 617 GXKXXPGGGGGGGXXXXKXGXGGG 546
           G      GGG GG      G GGG
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGGG 108


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 545 PPPPXXSFXXXXPPPPXP 598
           P  P  +F    PPPP P
Sbjct: 724 PLTPHEAFDVKLPPPPHP 741


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 545 PPPPXXSFXXXXPPPPXP 598
           P  P  +F    PPPP P
Sbjct: 616 PLTPHEAFDVKLPPPPHP 633


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +3

Query: 549 PPPPXLXXXXPPPPPXPXGXFXP 617
           PPPP      P P   P   + P
Sbjct: 330 PPPPYQISAQPTPSQSPNQIYQP 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,659
Number of Sequences: 336
Number of extensions: 1889
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)