Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D08
         (807 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.8  
UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA...    34   4.8  

>UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus torques ATCC 27756|Rep: Putative
           uncharacterized protein - Ruminococcus torques ATCC
           27756
          Length = 159

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 23/57 (40%), Positives = 23/57 (40%)
 Frame = +1

Query: 370 GGGFKKTPLFXXXGXGGXPXFFFXXPPXFFFXXKKRXGGXXXXPPXXXKKKXTXPXP 540
           GGGF     F        P FFF     F F  KKR GG    PP   KKK   P P
Sbjct: 90  GGGFF---FFFPPPQQNPPPFFFFFLGFFLFFFKKR-GGGGFSPPPPKKKKIFFPPP 142


>UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to CG33556-PA - Strongylocentrotus purpuratus
          Length = 1472

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 27/99 (27%), Positives = 27/99 (27%)
 Frame = +2

Query: 500 PPXXXKKXKPXXXPXVXXPPXRGGGXFXXXXKXXXXGGXXXXLPXPGXKXXKPFXXGXFF 679
           PP       P   P    PP  GG            GG     P P      PF  G   
Sbjct: 427 PPLPPGVGAPPPPPPPPPPPLPGGSCIPPPPPPPGMGGAPPPPPPP------PFPGG--V 478

Query: 680 XXXXGXKKXXXGXPXPPXXXXGXXXPKXFXXGGXAPPPP 796
                        P PP    G   P  F  GG  PPPP
Sbjct: 479 PPPPPLPGGAPPPPPPPPFPGGGVPPPPFPGGGPPPPPP 517


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,788,826
Number of Sequences: 1657284
Number of extensions: 8532725
Number of successful extensions: 10336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9072
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)