Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D08
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   1.3  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    25   2.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    25   2.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   5.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   6.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   6.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   6.8  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
 Frame = -2

Query: 449 GGXXKKXXGXPPXPXXXKXGV--FLXPPPXXXAQX*KXFXPPXXXPPXFLNPPPXXXXXX 276
           GG  +   G PP           F  PPP   +       PP   PP    PPP      
Sbjct: 341 GGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAP 400

Query: 275 RGXXXPG 255
           +G   PG
Sbjct: 401 QGPGGPG 407


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 25.0 bits (52), Expect(2) = 2.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 717 PPXPPXXXXGXXXXKXFXXGGXPPPPP 797
           PP PP    G         GG PPPPP
Sbjct: 327 PPPPPPSRFGPPGM-----GGMPPPPP 348



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 774 GGXPPPPPXXF 806
           GG PPPPP  +
Sbjct: 355 GGMPPPPPPRY 365


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 25.0 bits (52), Expect(2) = 2.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 717 PPXPPXXXXGXXXXKXFXXGGXPPPPP 797
           PP PP    G         GG PPPPP
Sbjct: 317 PPPPPPSRFGPPGM-----GGMPPPPP 338



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 774 GGXPPPPPXXF 806
           GG PPPPP  +
Sbjct: 345 GGMPPPPPPRY 355


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 713 GXPXPPXXXXGXXXPKXFXXGGXAPPPP 796
           G P PP    G   P     GG  PPPP
Sbjct: 82  GIPPPPPMFAGGIPPPPPMMGGIPPPPP 109


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +1

Query: 232 GKXFWGXNPGXXFPRXXXXXXGGGFKKXGGXXXGGXKXFXXWAXXXGGG 378
           G+  WG N G           GG     GG   GG      W    GGG
Sbjct: 84  GRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGG 132


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
 Frame = +3

Query: 690 GGXKXXXXGPPXPPXXXXGXXXXKX------FXXGGXPPPPPXXF 806
           GG      GPP PP    G            F  G  PPPPP  F
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
 Frame = +3

Query: 690 GGXKXXXXGPPXPPXXXXGXXXXKX------FXXGGXPPPPPXXF 806
           GG      GPP PP    G            F  G  PPPPP  F
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
 Frame = +3

Query: 690 GGXKXXXXGPPXPPXXXXGXXXXKX------FXXGGXPPPPPXXF 806
           GG      GPP PP    G            F  G  PPPPP  F
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,434
Number of Sequences: 27780
Number of extensions: 239018
Number of successful extensions: 304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)