Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D07
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    42   2e-04
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.89 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   1.6  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    27   3.6  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   8.3  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
 Frame = +1

Query: 208 IAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDHEAMQ-- 381
           +  T  +GY +YFD +RR DP F+K L+ R     +   +   L     D+   EA+Q  
Sbjct: 10  LLATAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQVV 69

Query: 382 -------------RFFLQQIQ--XXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQ 516
                         FF+QQ+                       A+ V  Q  +L ++ ++
Sbjct: 70  ASTPVPSSAEEKELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYER 129

Query: 517 TMPAPIFHLL 546
           T+P PI +LL
Sbjct: 130 TVPEPIMNLL 139


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 181 STTLGLAVGIAGTLFLGYCVYF-DQQRRKDP 270
           S  LGL +G+  ++F GYC  F D++  K P
Sbjct: 316 SMPLGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 253 QRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDM--NDHEAMQRFFLQQIQ 405
           Q R+  L   K++  R+N+Q NA  +  LG P PD   N     Q+ F QQ Q
Sbjct: 406 QHRQQQL--NKIQNARMNSQ-NAPNTNKLGNPQPDNTGNPQAFSQQAFAQQQQ 455


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = -1

Query: 831  IFVVNSLVTYFAKNMFWKIQN-HEAIR---SASFNIIYE*VYLQKTDKNKTKINYYGHHV 664
            + +V SL T         +   H  IR   S  FN + E V   + D++   I Y     
Sbjct: 963  VLLVTSLKTMLTSKEEINLSTLHTQIRLLLSCLFNQLIEVVTEDQVDESTKGILYEIMST 1022

Query: 663  LLSSLQIHNFLFDIFFLHYVAPRLHRGS 580
            L    +   FLFD+ +LH + P L   S
Sbjct: 1023 LFVFSRAFPFLFDLSYLHLLKPYLRSAS 1050


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 552 LKKQMEDW-SWHSLLKYTKQLFSLSTNSHSL 463
           L+   ++W +W   ++Y K L  +S N HS+
Sbjct: 126 LRDPNDEWKAWQKRMRYKKNLTKISKNHHSI 156


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +2

Query: 362 TIMKLCR--DFSCNRFNSAKSCW 424
           T+ K+C+  + SC RFN  K  W
Sbjct: 84  TVQKVCKKLNISCRRFNFEKEYW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,304
Number of Sequences: 5004
Number of extensions: 57189
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)