Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_D07
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 105 4e-23
Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical pr... 36 0.039
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 31 1.5
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 29 4.5
U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone... 28 7.8
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 28 7.8
U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone... 28 7.8
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 7.8
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 7.8
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 7.8
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 7.8
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 28 7.8
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 28 7.8
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 28 7.8
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 7.8
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 105 bits (252), Expect = 4e-23
Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Frame = +1
Query: 166 MLAITSTTLGLAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRT 336
+L + + LA GIAG FLGYC+YFD +R P +K K+R++R A A R
Sbjct: 5 ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64
Query: 337 LGG--PVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVL 510
G PD+ D MQRFFLQ++Q H+ AV +CG+++QLLS+
Sbjct: 65 AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124
Query: 511 QQTMPAPIFHLLLKKLPEVSERLRSSMKARSNVMQEE 621
QQT+ F ++++LP ERL A+++ + E
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERLAEMFGAKADEAENE 161
>Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical
protein F32B4.2 protein.
Length = 167
Score = 35.9 bits (79), Expect = 0.039
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Frame = +1
Query: 193 GLAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGP-------V 351
G+ VG A L + Y+ Q+++ E ++S R GG +
Sbjct: 13 GVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADSKAKFNI 72
Query: 352 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXX-VEHLGQAVAVCGQTEQLLSVLQQTMPA 528
D N ++ F++Q+ H+ A+ + G+T QLL VL+ ++
Sbjct: 73 EDENVRRVCEKLFMEQMDLGEAYLEDEETEELGAIHMANAIVLTGETAQLLKVLRGSISP 132
Query: 529 PIFHLLLKKLPEVSERLRSSMK 594
F + K LP R+ ++
Sbjct: 133 AHFANIQKYLPSADLRVHQLLQ 154
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 223 FLGYCVYFDQQRRKDPLFKKKLRERRLN--AQQNASRSRTLGGPVPDMNDHEA 375
F YC + QQ R + + ++K ERRL ++ +AS++R GG P E+
Sbjct: 205 FGAYCYWKVQQWRDEKMAREKAWERRLARVSEVSASKNRNAGGVDPAKRPRES 257
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 468 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 376
SL + ++SF+ + S++ F + NL+QEK H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713
>U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform c protein.
Length = 395
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 588 DEGEEQRNAGRRCRIKNCVFEEMKVKH 668
D E RN R CR++NC+ M KH
Sbjct: 9 DITNESRNRCRACRLRNCLEGGMNPKH 35
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 588 DEGEEQRNAGRRCRIKNCVFEEMKVKH 668
D E RN R CR++NC+ M KH
Sbjct: 142 DITNESRNRCRACRLRNCLEGGMNPKH 168
>U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform b protein.
Length = 576
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 588 DEGEEQRNAGRRCRIKNCVFEEMKVKH 668
D E RN R CR++NC+ M KH
Sbjct: 190 DITNESRNRCRACRLRNCLEGGMNPKH 216
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 597 EEQRNAGRRCRIKNCV 644
+EQRNA R CR+K C+
Sbjct: 68 KEQRNACRSCRLKECI 83
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 597 EEQRNAGRRCRIKNCV 644
+EQRNA R CR+K C+
Sbjct: 76 KEQRNACRSCRLKECI 91
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 597 EEQRNAGRRCRIKNCV 644
+EQRNA R CR+K C+
Sbjct: 76 KEQRNACRSCRLKECI 91
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 597 EEQRNAGRRCRIKNCV 644
+EQRNA R CR+K C+
Sbjct: 76 KEQRNACRSCRLKECI 91
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 588 DEGEEQRNAGRRCRIKNCVFEEMKVKH 668
D E RN R CR++NC+ M KH
Sbjct: 139 DITNESRNRCRACRLRNCLEGGMNPKH 165
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 588 DEGEEQRNAGRRCRIKNCVFEEMKVKH 668
D E RN R CR++NC+ M KH
Sbjct: 148 DITNESRNRCRACRLRNCLEGGMNPKH 174
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 588 DEGEEQRNAGRRCRIKNCVFEEMKVKH 668
D E RN R CR++NC+ M KH
Sbjct: 141 DITNESRNRCRACRLRNCLEGGMNPKH 167
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 597 EEQRNAGRRCRIKNCV 644
+EQRNA R CR+K C+
Sbjct: 88 KEQRNACRSCRLKECI 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,228
Number of Sequences: 27780
Number of extensions: 327562
Number of successful extensions: 1121
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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