Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D06
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    32   0.13 
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    30   0.41 
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   6.7  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   8.8  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 28/117 (23%), Positives = 56/117 (47%)
 Frame = +1

Query: 283 GCTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSL 462
           G T  T  PT+   +L   R    + L  +R   +  +P +P ++  ++    A  +++ 
Sbjct: 250 GATWYTAVPTIHQILL---RTPPPKPLPRIRFIRSCSSPLAPPVLSKLEATFRAPVLEA- 305

Query: 463 YGLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRG 633
           Y +TE +  +  +N    +     +VG     VE+K+++++G  +P    GE+ VRG
Sbjct: 306 YAMTEASHQM-TTNPLPPLVHKPHSVGK-PFGVELKILDQKGNEMPQGKEGEICVRG 360


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 344 PKVRRCFLNSGWRSPPERPAAPN*LEIYKHISMLNQLKVCTV*LRQQLAY 493
           P   RC L++   SPP+ P  PN L +Y     LN  +V  + L  Q ++
Sbjct: 387 PNTERCILSAFICSPPQLP-LPNPLRMYLPCPSLNSTEVSVITLAPQHSF 435


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 807 PSRPXXNRKICXTTHSRMLTKRSXSAXKWPDQT 905
           PSR   N     + HS +   +S  + KWP  T
Sbjct: 717 PSRDARNSLTSLSLHSNVAKNKSSHSSKWPTHT 749


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 262 LPPVKIPWLXVVKVHG 215
           +P  KIPWL V+K++G
Sbjct: 284 VPLTKIPWLLVLKMYG 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,426
Number of Sequences: 5004
Number of extensions: 63632
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)