Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_D06
(940 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0305 - 14125193-14125421,14125666-14127104 55 9e-08
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 46 4e-05
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 37 0.027
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 35 0.11
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 33 0.25
04_04_1635 - 34943881-34945233,34945321-34945524 33 0.25
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 32 0.76
01_06_1694 + 39246262-39247320,39247464-39247590,39248638-392487... 32 0.76
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 31 1.0
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495 31 1.3
07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283 30 3.1
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216... 29 4.0
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265... 29 4.0
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 9.3
11_06_0138 + 20522197-20522670 28 9.3
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 28 9.3
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 54.8 bits (126), Expect = 9e-08
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Frame = +1
Query: 268 LVSPRGCTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAE 447
LV R A P M + S + + L+ + A AP +P L+ Q
Sbjct: 279 LVDHRVMFAPLVPPVMLAMVKSPVADEFDLSDLALKSVMTAAAPLAPDLLAAFQRKFPGV 338
Query: 448 SVKSLYGLTETTACIFQSNQGDSIDVVAE--TVGYIQDHVEVKVVN-EQGEIVPFETPGE 618
V+ YGLTE + GD VA+ +VG+I ++EVK V+ + G +P TPGE
Sbjct: 339 QVEEAYGLTEHSCITLTHAAGDGHGHVAKKSSVGFILPNLEVKFVDPDTGRSLPANTPGE 398
Query: 619 LVVRG-------YXNMILLLGTXPEKDYANSGQRRLAEGPGDKFTI 735
L VR Y T K + ++G +G GD F +
Sbjct: 399 LCVRSQSVMQGYYKRKEETERTVDGKGWLHTGDVGYIDGDGDVFIV 444
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 361 LSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTETTACIFQSNQGDSIDVVAETV 540
L ++R ++ GAP +LI + + YGLTE+TA I S T
Sbjct: 314 LGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTA-IGASTDSAEESRRYGTA 372
Query: 541 GYIQDHVEVKVVN-EQGEIVPFETPGELVVRG 633
G + + E K+V+ + GE +P GEL +RG
Sbjct: 373 GLLSPNTEAKIVDPDSGEALPVNRTGELWIRG 404
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 36.7 bits (81), Expect = 0.027
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 451 VKSLYGLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVN-EQGEIVPFETPGELVV 627
V++ YGLTET+ + + V TVG+ H E+KVV+ E GE++P + G + V
Sbjct: 444 VQNGYGLTETSPVVAARRPFCN---VLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKV 500
Query: 628 RG 633
RG
Sbjct: 501 RG 502
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 34.7 bits (76), Expect = 0.11
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = +1
Query: 289 TAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYG 468
T ++ P + V + A+ ++ LS L V GAP ++ + T + + YG
Sbjct: 320 TKLSAAPPVVVALTKSDEARRRD-LSSLVAIVVGGAPLGREVSQRFATVFPSVQIVQSYG 378
Query: 469 LTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVN 579
LTE+T + + G +VG + V+ K+V+
Sbjct: 379 LTESTGPV-ATMAGPEESAAYGSVGRLAPRVQAKIVD 414
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 33.5 bits (73), Expect = 0.25
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +1
Query: 367 ELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTETTACIFQSNQGDSIDVVAETVGY 546
+LR V+ GAP S + + + SV YGLTET A F + D +V TVG
Sbjct: 343 KLRFIVSGGAPLSVA-VEEFLRVVTCASVVQGYGLTETGAASFVAIPND-FSMVG-TVGP 399
Query: 547 IQDHVEVKV--VNEQGEIVPFETP-GELVVRG 633
+H++ ++ V E G P GE+ V+G
Sbjct: 400 PVEHLDARLESVPEMGYDALSSIPRGEVCVKG 431
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 33.5 bits (73), Expect = 0.25
Identities = 27/117 (23%), Positives = 53/117 (45%)
Frame = +1
Query: 283 GCTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSL 462
G T T PT+ I+ + ++ + LR + A +P ++ ++ A V++
Sbjct: 252 GATWYTAVPTIHQIIIDRHTSKPEAEYPALRFIRSCSASLAPAIMEKLEAAFGAPVVEA- 310
Query: 463 YGLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRG 633
Y +TE + + + + A +VG E+ +++E+G V GE+ VRG
Sbjct: 311 YAMTEASHLMTSNPLPEDGARKAGSVGRAVGQ-EMAILDEEGRRVEAGKSGEVCVRG 366
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 31.9 bits (69), Expect = 0.76
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Frame = +1
Query: 241 MVFLLVVGPLVSPRGCTAITGTPTMFVDILSQIRAQ-------GQEVLSELR-----VAV 384
+ L+ + PLVS I GTP + D+ S I + G+E L E V +
Sbjct: 42 LALLMKLNPLVSSLSLYDIAGTPGVAADV-SHINSPALVKGFVGEEQLGEALEGSDVVII 100
Query: 385 AAGAPCSPQLIRDIQTHLNAESVKSL 462
AG P P + RD ++NA VK L
Sbjct: 101 PAGVPRKPGMTRDDLFNINAGIVKGL 126
>01_06_1694 +
39246262-39247320,39247464-39247590,39248638-39248783,
39248898-39248965,39249055-39249157,39249616-39249741
Length = 542
Score = 31.9 bits (69), Expect = 0.76
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +1
Query: 289 TAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHL-NAESVKSLY 465
T + P + V ++ A+ ++ LS L V GAP ++ + N E V+ Y
Sbjct: 298 TLLPAAPPVLVAMVKYEEARRRD-LSSLLVIGIGGAPLGREVAEQFASVFPNVELVQG-Y 355
Query: 466 GLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVN 579
GLTE++ + + G +VG + H++ K+V+
Sbjct: 356 GLTESSGAV-AATVGPEESKAYGSVGKLGSHLQAKIVD 392
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 31.5 bits (68), Expect = 1.0
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +1
Query: 250 LLVVGPLVSPRGCTAITGTPTMFVDIL-----SQIRA-QGQEVLSELR-----VAVAAGA 396
L+ + PLVS I GTP + D+ +Q++ G + L E V + AG
Sbjct: 46 LMKLNPLVSSLSLYDIAGTPGVAADVSHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGV 105
Query: 397 PCSPQLIRDIQTHLNAESVKSL 462
P P + RD ++NA VK+L
Sbjct: 106 PRKPGMTRDDLFNINAGIVKNL 127
>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
Length = 344
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 340 RAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTETTACIFQSNQGDSI 519
RA+G ++S + A+GA C + D+ HL ++ +GL T+ Q GD++
Sbjct: 130 RAKGAHLIS--LTSAASGADCPLAAVCDLNVHLPLQAEVCPFGLAPVTSTAIQMVFGDTV 187
>07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283
Length = 249
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 535 TVGYIQDHVEVKVVN-EQGEIVPFETPGELVVRGYXNM 645
++G + VE K+V+ + GE++P GEL VRG M
Sbjct: 50 SIGRLMPDVEAKIVDPDSGELLPPRRTGELWVRGPSTM 87
>12_01_0288 -
2160981-2161076,2161150-2161236,2161333-2161419,
2161641-2161726,2161805-2161908,2162618-2162704,
2162790-2162913,2163058-2163176,2163268-2163397,
2163583-2163671,2163804-2163892,2164579-2164672,
2164778-2164857,2164952-2165041,2166307-2166393,
2166495-2166539,2166966-2167042,2167120-2167225,
2167383-2167464,2167553-2167624,2168106-2168183,
2168259-2168349,2168826-2168979
Length = 717
Score = 29.5 bits (63), Expect = 4.0
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +1
Query: 370 LRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTETTACIFQSNQGDSI--DVVAETVG 543
+R+ + +P S ++ ++ E ++ YG+TET+ I N GD + V +
Sbjct: 435 VRLMTSGASPLSADVMEFLRICFGGEVLEG-YGMTETSCIISAMNIGDRLIGHVGSPNPS 493
Query: 544 YIQDHVEVKVVNEQGEIVPFETPGELVVRG 633
V+V +N E P+ GE+ VRG
Sbjct: 494 CEIKLVDVPEMNYTSEDEPYPR-GEICVRG 522
>08_01_1048 +
10624027-10624575,10625332-10625522,10626044-10626539,
10626664-10626749,10626853-10627033
Length = 500
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 676 PSPXSFPVARSCCXSRVQQAR 614
PSP S P+AR CC +Q R
Sbjct: 8 PSPPSLPIARQCCCHLLQLGR 28
>11_06_0458 +
23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 591 LPLFVYHLDFNVILNITNCLGYDVYTVALVGLEYASC 481
LP + L F VIL++ NC+G ++V L + C
Sbjct: 656 LPDQIGELQFLVILDLLNCIGISKLPASIVILRHLKC 692
>11_06_0138 + 20522197-20522670
Length = 157
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 305 LPPCS*TSYPRSE--PKVRRCFLNSGWRSPPERPAAP 409
+PPC S P + P + F+ + W +PP RP P
Sbjct: 77 IPPCWLPSPPPGDVVPMLDSYFVAARWLAPPRRPPTP 113
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 439 NAESVKSL---YGLTETTACIFQSNQGDSIDVVAETVGYIQD 555
N E +SL Y +T+ C+ QSNQGD D + E + ++D
Sbjct: 611 NCEQYRSLQMAYQVTQRLICLKQSNQGD--DYIREALQNLKD 650
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,066,888
Number of Sequences: 37544
Number of extensions: 480104
Number of successful extensions: 1130
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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