Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_D06
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-10|AAV58866.1| 578|Caenorhabditis elegans Hypothetical... 85 9e-17
AF125955-9|AAV58865.1| 597|Caenorhabditis elegans Hypothetical ... 85 9e-17
AF125955-8|AAD14712.1| 623|Caenorhabditis elegans Hypothetical ... 85 9e-17
Z81071-2|CAB03012.1| 618|Caenorhabditis elegans Hypothetical pr... 75 1e-13
Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical pr... 39 0.004
U58758-13|AAB93427.1| 565|Caenorhabditis elegans Hypothetical p... 36 0.042
U64598-5|AAK39217.3| 638|Caenorhabditis elegans Mechanosensory ... 33 0.29
U50072-1|ABP49527.1| 378|Caenorhabditis elegans Hypothetical pr... 29 3.6
>AF125955-10|AAV58866.1| 578|Caenorhabditis elegans Hypothetical
protein F46E10.1c protein.
Length = 578
Score = 84.6 bits (200), Expect = 9e-17
Identities = 44/120 (36%), Positives = 68/120 (56%)
Frame = +1
Query: 286 CTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLY 465
CTA+ GTPTMF+D+++ S +R AGAPC L R + ++ ++ Y
Sbjct: 300 CTALYGTPTMFIDMINHPEYANYNYDS-IRSGFIAGAPCPITLCRRLVQDMHMTDMQVCY 358
Query: 466 GLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRGYXNM 645
G TET+ F S + D + ++VG+I DH+E +V+++ IVP GE++VRGY M
Sbjct: 359 GTTETSPVSFMSTRDDPPEQRIKSVGHIMDHLEAAIVDKRNCIVPRGVKGEVIVRGYSVM 418
>AF125955-9|AAV58865.1| 597|Caenorhabditis elegans Hypothetical
protein F46E10.1b protein.
Length = 597
Score = 84.6 bits (200), Expect = 9e-17
Identities = 44/120 (36%), Positives = 68/120 (56%)
Frame = +1
Query: 286 CTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLY 465
CTA+ GTPTMF+D+++ S +R AGAPC L R + ++ ++ Y
Sbjct: 319 CTALYGTPTMFIDMINHPEYANYNYDS-IRSGFIAGAPCPITLCRRLVQDMHMTDMQVCY 377
Query: 466 GLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRGYXNM 645
G TET+ F S + D + ++VG+I DH+E +V+++ IVP GE++VRGY M
Sbjct: 378 GTTETSPVSFMSTRDDPPEQRIKSVGHIMDHLEAAIVDKRNCIVPRGVKGEVIVRGYSVM 437
>AF125955-8|AAD14712.1| 623|Caenorhabditis elegans Hypothetical
protein F46E10.1a protein.
Length = 623
Score = 84.6 bits (200), Expect = 9e-17
Identities = 44/120 (36%), Positives = 68/120 (56%)
Frame = +1
Query: 286 CTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLY 465
CTA+ GTPTMF+D+++ S +R AGAPC L R + ++ ++ Y
Sbjct: 345 CTALYGTPTMFIDMINHPEYANYNYDS-IRSGFIAGAPCPITLCRRLVQDMHMTDMQVCY 403
Query: 466 GLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRGYXNM 645
G TET+ F S + D + ++VG+I DH+E +V+++ IVP GE++VRGY M
Sbjct: 404 GTTETSPVSFMSTRDDPPEQRIKSVGHIMDHLEAAIVDKRNCIVPRGVKGEVIVRGYSVM 463
>Z81071-2|CAB03012.1| 618|Caenorhabditis elegans Hypothetical
protein F28F8.2 protein.
Length = 618
Score = 74.5 bits (175), Expect = 1e-13
Identities = 61/186 (32%), Positives = 85/186 (45%), Gaps = 2/186 (1%)
Frame = +1
Query: 286 CTAITGTPTMFVDILSQIRAQGQEVLSELRVAVAAGAPCSPQLIRDIQTHLNAESVKSLY 465
CT + GTPTMF+D+L + Q +S LR V GAPC L + + +Y
Sbjct: 337 CTTMFGTPTMFIDVLKSPLMK-QFDISSLRGGVIGGAPCPMALCEKMVKEMRMTDFSVIY 395
Query: 466 GLTETTACIFQSN-QGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETPGELVVRGYXN 642
G TET+ + S D + + ++VG + H E+ +V+E G VP GEL RGY
Sbjct: 396 GSTETSPLVTMSELHVDPFERI-KSVGSVMPHQELAIVDEFGVPVPTGAKGELWSRGYST 454
Query: 643 MILLLGTXPEKDYANSG-QRRLAEGPGDKFTIKXXTXYGXIVGRIXDIHRSXEGXNHRXX 819
M LG + D N R GD T+ IVGR D+ +G +
Sbjct: 455 M---LGYWADHDKTNLAITRDRWYKSGDTATMNEDGTIN-IVGRTRDM--IVKGGENVYP 508
Query: 820 XEIEKF 837
EIE+F
Sbjct: 509 TEIEQF 514
>Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical
protein AH10.1 protein.
Length = 566
Score = 39.1 bits (87), Expect = 0.004
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = +1
Query: 370 LRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTE----TTACIFQSNQGDSIDVVAET 537
L+V ++AGA QL ++Q + YG+TE TT IF+ G+ ET
Sbjct: 313 LKVIMSAGATAGKQLCEEVQKRFPNAWLCQAYGMTEMVQFTTLPIFE--HGNCF----ET 366
Query: 538 VGYIQDHVEVKVVNEQG-EIVPFETPGELVVRG 633
VG + E+K+++++G E+ +T G+L RG
Sbjct: 367 VGSLGPTYEMKILDKEGKEVDKTDTVGQLCFRG 399
>U58758-13|AAB93427.1| 565|Caenorhabditis elegans Hypothetical
protein ZK1127.2 protein.
Length = 565
Score = 35.9 bits (79), Expect = 0.042
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 370 LRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTETT--ACIFQSNQGDSIDVVAETVG 543
L+V ++AGA QL ++ + YG+TE I + G+ ETVG
Sbjct: 313 LKVIMSAGATAGKQLCEEVSKRFPNAWLCQAYGMTEMVQFTTIPRFEDGNCF----ETVG 368
Query: 544 YIQDHVEVKVVN-EQGEIVPFETPGELVVRG 633
+ E+K+++ E+ EI T G+L RG
Sbjct: 369 NLASTYELKILDKEKKEITTINTVGQLCFRG 399
>U64598-5|AAK39217.3| 638|Caenorhabditis elegans Mechanosensory
abnormality protein18 protein.
Length = 638
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 370 LRVAVAAGAPCSPQLIRDIQTHLNAESVKSLYGLTETTACIFQSNQGDSIDVVAETVGYI 549
LR + AGAP +++ LN + + +G+TE S +D E+VG
Sbjct: 356 LRSVLCAGAPIDSNSAAAMKSRLNIKDFRQSFGMTELGGICTMS---PYLDEKIESVGNP 412
Query: 550 QDHVEVKVVN-EQGEIVPFETPGELVVRG 633
+ KVVN E ++ PG+++V G
Sbjct: 413 LPGMLFKVVNWETKQLCLPRQPGQIIVLG 441
>U50072-1|ABP49527.1| 378|Caenorhabditis elegans Hypothetical
protein K06B9.2 protein.
Length = 378
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 454 KSLYGLTETTACIFQSNQGDSIDVVAETVGYIQDHVEVKVVNEQGEIVPFETP 612
K L+G F N D + + + Y + H ++ VNEQG IV E P
Sbjct: 215 KYLFGAGSIANHFFTMNFMDRVCSPSSRLPYHRAHKKISYVNEQGTIVKPENP 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,028,272
Number of Sequences: 27780
Number of extensions: 380227
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -