Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D05
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.073
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.51 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.61 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 489 PPPXPGXFFXKKXXPPPPPPP 427
           PPP P   F     PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 489 PPPXPGXFFXKKXXPPPPPPP 427
           PPP P         PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 489 PPPXPGXFFXKKXXPPPPPPP 427
           PPP P         PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 489 PPPXPGXFFXKKXXPPPPPPPXXXXRXGP 403
           PPP P         PPPPPPP      GP
Sbjct: 752 PPPAP-----IMGGPPPPPPPPGVAGAGP 775


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 456 KXXPPPPPPPXXXXRXGP 403
           K  PPPPPPP    R  P
Sbjct: 308 KKRPPPPPPPSRRNRGKP 325



 Score = 24.2 bits (50), Expect(2) = 0.61
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 459 KKXXPPPPPP 430
           KK  PPPPPP
Sbjct: 308 KKRPPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 0.61
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 447 PPPPPPP 427
           PPPPPPP
Sbjct: 337 PPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,185
Number of Sequences: 5004
Number of extensions: 20000
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)