Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D04
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   5.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   6.9  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   6.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   9.1  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 628 QFIGFEGAQXPPPANMYMS*--TPRGTAGYGGSGXPALREPXGLTGPAS 768
           ++ G+ G+  P   N        PR +AG GG+  PA  +P GL G +S
Sbjct: 309 RYRGWNGSPTPAAGNNTNGRPVAPRPSAGAGGANPPAASQP-GLLGGSS 356


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 242 QVSSGLYIGRYCHFYSFSLSFKRLGVPCS 156
           Q+++ L   RYC +Y+F ++   L +P S
Sbjct: 497 QITTWLKWPRYCEYYNFDIAETFLSIPLS 525


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = -2

Query: 665 GGGXCAPSNPMNCTSTSPSTVRCEMRWXLQPVRELAEVHAVQRHLEGARLAQHQRLEGLP 486
           G G    S+PM  +S  P     E     Q  ++  +    QR ++       Q++    
Sbjct: 96  GSGSVKYSSPMMPSSRIPFQQEKEAAMQQQQQQQQQQ-QLYQRQMQSREALLSQQIPPNQ 154

Query: 485 VGVQRHPARRLLGAPA 438
           +G+  HPA R    PA
Sbjct: 155 IGINAHPAVRQTPQPA 170


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 575 PVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 417
           P RELA  H + +H E  + + + R+  +  G+     +RLL    HV    P
Sbjct: 200 PTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 226 NPDDTCACTPS--RAACTQGACSASRAECRPAHRGSXSTCSAD 348
           N DD   C  S    +C  G C+++  +C+     S  +C +D
Sbjct: 399 NWDDGRICQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSD 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,402
Number of Sequences: 5004
Number of extensions: 56159
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)