Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_D03
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 122 7e-29
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 112 5e-26
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 105 6e-24
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 91 1e-19
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 82 1e-16
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 77 4e-15
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 73 4e-14
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 69 7e-13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 3e-08
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 54 3e-08
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 47 3e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 45 2e-05
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 44 4e-05
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 43 5e-05
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 40 5e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 40 6e-04
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 39 8e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.003
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 36 0.008
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 29 0.88
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 28 2.0
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 2.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 3.5
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.2
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 8.2
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 8.2
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 122 bits (294), Expect = 7e-29
Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Frame = +3
Query: 366 KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLW 539
KSYDYL+K+LL+GDS VGK +L + S F + G +K TI LDGKR+KLQ+W
Sbjct: 4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIW 63
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
DT+GQ RF TI +Y RGA GILL+YD+T+K SFD++ W VE+HA
Sbjct: 64 DTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHA 111
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 112 bits (270), Expect = 5e-26
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 3/116 (2%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDT 545
YDYL K+LL+GDS VGK +L D + + S G +K T L+GK VKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDT 64
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA-PGVQKFWSG 710
+GQ RF TI SY RGA GI++VYD+T++ SF+++ +WL+E++++A GV + G
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 105 bits (253), Expect = 6e-24
Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDT 545
YDYL K +L+GDS VGK +L + + +S G + T I+LD K++K Q+WDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+GQ R+ I +Y RGA G L+VYDIT + SFD++ RWL+E+ +HA
Sbjct: 67 AGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHA 112
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 91.5 bits (217), Expect = 1e-19
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Frame = +3
Query: 366 KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLD------GKRVK 527
+SYDYL+K++L G S GK +LQ D G + ++ KR+K
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 528 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHAP 686
LQ+WDT+GQ +F ++ R+Y RGA G +LVYD+TNK SF+ + WL ++ AP
Sbjct: 64 LQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAP 116
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 81.8 bits (193), Expect = 1e-16
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +3
Query: 378 YLLKVLLVGDSDVGKQEILQDLEDG--SADSPFCSGSGYKTTTILLDGKRVKLQLWDTSG 551
+LLKV+++G+S VGK I+ + S D G+ + T +L+D K V LQLWDT+G
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 552 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEE 668
Q RF ++ ++ RGA +LVYD+ N SF+++D W +E
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDE 105
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 76.6 bits (180), Expect = 4e-15
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
LKV+++GDS VGK ++ + S + G+ + T +++D K V LQLWDT+GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEE 668
RF ++ ++ RGA ++VY++ N SFDS++ W +E
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQE 105
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 73.3 bits (172), Expect = 4e-14
Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQGR 560
K++ +G+ VGK ++ D+ + + G + + T+ L+ + V+LQLWDT+GQ R
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
F ++I SY R + ++VYDITN SF + ++W+E+V
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 69.3 bits (162), Expect = 7e-13
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQE-ILQDLEDGSADSPFCS-GSGYKTTTILLD-GKRVKLQLWDTSGQG 557
K++L+GDS VGK +L+ ++D D + G+ + T T+ +D VKL++WDT+GQ
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHAP 686
R+ ++ Y R A ++VYDIT S + W++E+++ AP
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAP 118
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 730 QRQVQERDAEMYAAKNHMAFFEVSPLCDFNIREKFCELSR 849
+R V++ DAE YAA+ ++ FFE S N+ E F +++
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAK 175
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSAD--SPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
+KV ++GDS +GK ++ GS D S G + TI + + +WD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEE 668
F ++ A IL ++D++ K + +SI W +
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQ 107
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 54.0 bits (124), Expect = 3e-08
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEI-LQDLEDGSADS--PFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
K+++VGD VGK + +Q ++ D P S K I DG+ L + DT+GQ
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEI--DGEGALLDVLDTAGQE 67
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
+ + Y R +G LLVY+IT++ SFD I + +++
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQI 105
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 47.2 bits (107), Expect = 3e-06
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPF--CSGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
K++++GD GK +L G + Y I +DG ++L LWDT+GQ
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 561 FCTIIRSYSRGAQGILLV-YDITNKWSFDS-IDRWLEEVEKHAPGVQ 695
+ +RS S ++++ + + ++ S ++ I +WL EV + PGV+
Sbjct: 74 Y-DQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVK 119
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.8 bits (101), Expect = 2e-05
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
++ ++G VGK + +Q +E+ +S + + + I G+ ++ DT+GQ +
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
+ +S G G +LVY IT+K SF+ + +++ H
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNH 106
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 43.6 bits (98), Expect = 4e-05
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQGR 560
K+++VGD GK +L G + + Y + +DGK V+L LWDT+GQ
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 561 FCTI-IRSYSRGAQGILLVYDITNKWSFDSID-RWLEEVEKHAPGV 692
+ + SY++ A IL+ + I + S +++ +W+EE+ P V
Sbjct: 69 YERLRPMSYAK-AHIILVGFAIDSPDSLENVSTKWIEEINTLCPNV 113
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 43.2 bits (97), Expect = 5e-05
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L S + Y T+++ + L L+DT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNY-AVTVMIGDEPYTLGLFDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKHAPGV 692
+ + R S + LV + +T+ SF+++ ++W EV H PGV
Sbjct: 63 DYDRL-RPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGV 108
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQGR 560
K+++VGD GK +L G+ + Y + +DG+ V+L LWDT+GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEV 671
+ + + IL+ + + + S D++ ++W+ EV
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV 104
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
+++L+VG GK IL L+ G + + G+ T+ + + + +WD GQ +
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVETV--EYRNISFTVWDVGGQDKI 74
Query: 564 CTIIRSYSRGAQGILLVYDITNK 632
+ R Y + QGI+ V D ++
Sbjct: 75 RPLWRHYFQNTQGIIFVVDSNDR 97
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 39.1 bits (87), Expect = 8e-04
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQGR 560
K+++VGD GK +L G+ + Y + +DG+ ++L LWDT+GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEV 671
+ + + +L+ + + S D++ ++W+ EV
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV 104
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/97 (19%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLDGK--RVKLQLWDTSGQGR 560
K++LVGD GK ++ G + + + G + + + +WDT+GQ +
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
+ Y Q ++++D+T++ ++ ++ W ++
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL 107
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 35.9 bits (79), Expect = 0.008
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTT-TILLDGKRVKLQLWDTSGQG 557
K+++VGD GK +L G+ + Y T T + K ++L LWDT+GQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAP 686
+ + + ILL + I S +++ ++W EV+ P
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP 119
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 29.1 bits (62), Expect = 0.88
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 225 VYTMTMFPASGSAAVPQQT-INGQVVQNGSTTLPR 326
VY T+ PA S + Q T +GQ +NGST LP+
Sbjct: 366 VYGDTVNPADPSLTLRQTTDFSGQNAENGSTNLPQ 400
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 615 YDITNKWSFDSIDRWLEEVEKHAPGVQKFWSGIGYTSLSTASTRT 749
YD NKW + ++D W + +++ K GI + + S T
Sbjct: 83 YDGVNKWGYRALDTWSIKADENCQQPDKLPEGIEWIAPSIVENVT 127
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 333 HQRTGRPPAAPKSYDYLLKVLLVGDS 410
H TGRP + D+LL++L VGDS
Sbjct: 22 HPLTGRPLRYLLTNDHLLQILQVGDS 47
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 490 RPRQYFWTERELSFSYGIPQDR 555
RPR+Y + ++L+F G+P+ R
Sbjct: 220 RPRKYSYVNKDLNFEEGLPRRR 241
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 112 WNIINKSYIKLQEH*HFINIMCTYALDKHHLGIRRALLFTQ*R 240
+N+INK I +Q+ F + MC Y +++ +R +++FT+ R
Sbjct: 73 FNLINK-IIDMQDGKRFNHRMCFYVVEEMKDYMRLSIIFTKNR 114
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 648 IDRWLEEVEKHAPGVQKF-WSGI 713
+D+WL E++ H P ++ F + GI
Sbjct: 342 LDQWLSEIDLHVPSLKVFHYQGI 364
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 55 RWLLELVFEYCQNKXPVSKWNIINKSY 135
RW L + F NK SKWN + K+Y
Sbjct: 117 RWPLNITF---LNKTAFSKWNQLGKTY 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,974
Number of Sequences: 5004
Number of extensions: 74744
Number of successful extensions: 240
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -