Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_D03
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 124 8e-29
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 124 8e-29
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 124 8e-29
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 119 3e-27
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 119 3e-27
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 113 1e-25
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 113 2e-25
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 109 3e-24
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 103 1e-22
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 103 1e-22
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 103 1e-22
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 103 1e-22
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 103 1e-22
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 99 2e-21
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 99 4e-21
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 97 1e-20
Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical pr... 97 2e-20
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 94 1e-19
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 92 6e-19
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 87 2e-17
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 87 2e-17
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 86 4e-17
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 84 1e-16
Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 83 2e-16
AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family pr... 83 2e-16
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 83 2e-16
Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical pr... 80 2e-15
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 79 4e-15
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 79 5e-15
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 75 5e-14
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 73 4e-13
Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical pr... 72 5e-13
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 72 5e-13
U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical pr... 72 6e-13
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 66 2e-11
Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 63 3e-10
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 63 3e-10
AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical ... 62 4e-10
AL032632-1|CAA21582.1| 248|Caenorhabditis elegans Hypothetical ... 60 3e-09
U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like prot... 59 5e-09
U68259-1|AAB16974.1| 69|Caenorhabditis elegans rab14-like prot... 57 2e-08
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 57 2e-08
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 51 1e-06
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 51 1e-06
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 50 2e-06
U68252-1|AAB16967.1| 66|Caenorhabditis elegans rab2-like protein. 50 2e-06
Z71180-2|CAA94890.1| 207|Caenorhabditis elegans Hypothetical pr... 49 4e-06
U68264-1|AAB16979.1| 66|Caenorhabditis elegans S10-like protein. 49 4e-06
AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-rela... 49 4e-06
Z82276-7|CAB05247.2| 195|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 47 2e-05
U55018-1|AAB40386.1| 195|Caenorhabditis elegans CeRac2 protein. 47 2e-05
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 47 2e-05
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 46 5e-05
Z78417-3|CAB01691.1| 195|Caenorhabditis elegans Hypothetical pr... 45 8e-05
X68492-1|CAA48506.1| 191|Caenorhabditis elegans small ras-relat... 45 8e-05
U82288-1|AAC47729.1| 195|Caenorhabditis elegans Rac-like GTPase... 45 8e-05
L04287-1|AAA28141.1| 191|Caenorhabditis elegans rac1 protein pr... 45 8e-05
L03711-1|AAA28140.1| 191|Caenorhabditis elegans rac1 protein pr... 45 8e-05
AF226867-1|AAF33846.1| 191|Caenorhabditis elegans cell-corpse e... 45 8e-05
AF038608-16|AAC25821.1| 191|Caenorhabditis elegans Cell death a... 45 8e-05
U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding pro... 44 1e-04
U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog ... 44 1e-04
CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical ... 44 1e-04
CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 42 6e-04
U68262-1|AAB16977.1| 74|Caenorhabditis elegans RAM1-like protein. 42 6e-04
AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylat... 42 6e-04
AL117204-37|CAB55148.2| 248|Caenorhabditis elegans Hypothetical... 42 6e-04
AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylat... 42 6e-04
L36965-1|AAC37216.1| 192|Caenorhabditis elegans guanine nucleot... 42 8e-04
AL132952-3|CAB63379.1| 192|Caenorhabditis elegans Hypothetical ... 42 8e-04
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 41 0.001
U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylati... 40 0.002
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 39 0.005
Z93378-2|CAB07583.1| 184|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical pr... 31 0.009
U68263-1|AAB16978.1| 115|Caenorhabditis elegans rab-like protein. 36 0.029
U23452-10|AAK31543.1| 191|Caenorhabditis elegans Hypothetical p... 36 0.038
L10078-1|AAA51433.1| 188|Caenorhabditis elegans guanine nucleot... 36 0.038
AL021475-2|CAA16313.1| 187|Caenorhabditis elegans Hypothetical ... 36 0.038
AF038608-15|AAC25820.1| 129|Caenorhabditis elegans Cell death a... 33 0.20
U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein. 33 0.27
Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr... 31 1.4
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 3.3
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 29 3.3
Z74043-1|CAA98547.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.4
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 29 4.4
Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z37093-6|CAJ85783.1| 176|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z37093-5|CAJ85782.1| 212|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 124 bits (299), Expect = 8e-29
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Frame = +3
Query: 366 KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLW 539
K+YDYL K+LL+GDS VGK +L D S ++ F S G +K TI LDGK++KLQ+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
DT+GQ RF TI +Y RGA GI+LVYDITN+ SF++I W+ +E+HA
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHA 110
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 124 bits (299), Expect = 8e-29
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Frame = +3
Query: 366 KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLW 539
K+YDYL K+LL+GDS VGK +L D S ++ F S G +K TI LDGK++KLQ+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
DT+GQ RF TI +Y RGA GI+LVYDITN+ SF++I W+ +E+HA
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHA 110
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 124 bits (299), Expect = 8e-29
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Frame = +3
Query: 366 KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLW 539
K+YDYL K+LL+GDS VGK +L D S ++ F S G +K TI LDGK++KLQ+W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
DT+GQ RF TI +Y RGA GI+LVYDITN+ SF++I W+ +E+HA
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHA 110
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 119 bits (286), Expect = 3e-27
Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = +3
Query: 360 APKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQ 533
A + YD L K+LL+GDS VGK IL D + ++ F S G +K TI L GK++KLQ
Sbjct: 2 ARRPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQ 61
Query: 534 LWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+WDT+GQ RF TI SY RGA GI+LVYDITN SFD+I +WL +++HA
Sbjct: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHA 111
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 119 bits (286), Expect = 3e-27
Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = +3
Query: 360 APKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQ 533
A + YD L K+LL+GDS VGK IL D + ++ F S G +K TI L GK++KLQ
Sbjct: 2 ARRPYDMLFKLLLIGDSGVGKTCILYRFSDDAFNTTFISTIGIDFKIKTIELKGKKIKLQ 61
Query: 534 LWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+WDT+GQ RF TI SY RGA GI+LVYDITN SFD+I +WL +++HA
Sbjct: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFDNIAKWLRNIDEHA 111
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 113 bits (273), Expect = 1e-25
Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDT 545
YDYL K+LL+GDS VGK +L D + + S G +K TI LDGK +KLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+GQ RF TI SY RGA GI++VYDIT++ +F+++ +WL+E++++A
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEIDRYA 113
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 113 bits (272), Expect = 2e-25
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Frame = +3
Query: 357 AAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKL 530
A + YD+L K+L++GDS VGK +L D + + + G +K T+ ++G+RVKL
Sbjct: 2 AGTRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMDINGQRVKL 61
Query: 531 QLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHAPGVQKFWSG 710
Q+WDT+GQ RF TI +Y RG G+++VYD+TN SF ++ RWL+E+E + VQK G
Sbjct: 62 QIWDTAGQERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEIENNCDSVQKVLVG 121
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 109 bits (261), Expect = 3e-24
Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGS-ADSPFCS-GSGYKTTTILLDGKRVKLQLWDT 545
+DYL K++LVGD VGK ++Q +G+ D + G + T+++DGKRVKLQ+WDT
Sbjct: 7 FDYLFKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTLVVDGKRVKLQIWDT 66
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH-APGVQKFWSG 710
GQ RF TI +SY R A GI+L YDIT K SF S+ RW+++V K AP V K G
Sbjct: 67 GGQERFRTITQSYYRSANGIVLCYDITCKQSFGSLQRWIDDVSKFAAPNVVKLLIG 122
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 103 bits (248), Expect = 1e-22
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Frame = +3
Query: 336 QRTGRPPAAP-KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
Q G P P +++DY+ K+L++G+S VGK L D S S F S G +K T+
Sbjct: 6 QPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVF 65
Query: 507 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+S+ W +++ ++
Sbjct: 66 RGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS 124
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 103 bits (248), Expect = 1e-22
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Frame = +3
Query: 336 QRTGRPPAAP-KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
Q G P P +++DY+ K+L++G+S VGK L D S S F S G +K T+
Sbjct: 6 QPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVF 65
Query: 507 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+S+ W +++ ++
Sbjct: 66 RGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS 124
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 103 bits (248), Expect = 1e-22
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Frame = +3
Query: 336 QRTGRPPAAP-KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
Q G P P +++DY+ K+L++G+S VGK L D S S F S G +K T+
Sbjct: 6 QPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVF 65
Query: 507 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+S+ W +++ ++
Sbjct: 66 RGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS 124
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 103 bits (248), Expect = 1e-22
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Frame = +3
Query: 336 QRTGRPPAAP-KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
Q G P P +++DY+ K+L++G+S VGK L D S S F S G +K T+
Sbjct: 20 QPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVF 79
Query: 507 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+S+ W +++ ++
Sbjct: 80 RGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS 138
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 103 bits (248), Expect = 1e-22
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Frame = +3
Query: 336 QRTGRPPAAP-KSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
Q G P P +++DY+ K+L++G+S VGK L D S S F S G +K T+
Sbjct: 6 QPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVF 65
Query: 507 LDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
KRVKLQ+WDT+GQ R+ TI +Y RGA G +L+YDITN+ SF+S+ W +++ ++
Sbjct: 66 RGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYS 124
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 99 bits (238), Expect = 2e-21
Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDT 545
YDYL KV+L+GDS VGK +L + + +S G + T +I ++GK VK Q+WDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSISVEGKTVKAQIWDT 67
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+GQ R+ I +Y RGA G LLVYDI ++++++RWL+E+ HA
Sbjct: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHA 113
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 99.1 bits (236), Expect = 4e-21
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDT 545
YDYL KV+L+GDS VGK +L + +S G + T +I ++GK VK Q+WDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQIWDT 67
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+GQ R+ I +Y RGA G LLVYDI ++++++RWL+E+ HA
Sbjct: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHA 113
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 97.5 bits (232), Expect = 1e-20
Identities = 42/101 (41%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQG 557
LK+L++G+S VGK ++ D D + G ++ T++ +DG RVKL +WDT+GQ
Sbjct: 12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQE 71
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
RF T+ SY RGAQG++ VYD+T++ SF+ ++ W++EV+ +
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTY 112
>Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical
protein K09A9.2 protein.
Length = 210
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Frame = +3
Query: 357 AAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGS--ADSPFCSGSGYKTTTILLDGKRVKL 530
AAP +Y Y+ K +++GD VGK +L + AD P G + T I + G+++KL
Sbjct: 3 AAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKL 62
Query: 531 QLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVE 674
Q+WDT+GQ RF + RSY RGA G L+VYDIT + +++ + WL + +
Sbjct: 63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLADAK 110
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 94.3 bits (224), Expect = 1e-19
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Frame = +3
Query: 369 SYDYLLKVLLVGDSDVGKQEILQDLEDGSADS--PFCSGSGYKTTTILLDGKRVKLQLWD 542
SY YL K +++GD+ VGK +L D G + + +DGK++KLQ+WD
Sbjct: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWD 61
Query: 543 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
T+GQ F +I RSY RGA G LLVYDIT + +F+ + WLE+ +H+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTSWLEDARQHS 108
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 91.9 bits (218), Expect = 6e-19
Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Frame = +3
Query: 369 SYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWD 542
SY++L K+++VGD + GK IL + S S G +K TI L +++L+LWD
Sbjct: 2 SYNHLFKIVVVGDHNCGKSCILLRFAENSFRMDHISTLGVDFKLKTIKLGRDKIRLELWD 61
Query: 543 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDR-WLEEVEKHAP 686
T+G R+ TI SY A G++ VYD+TN+ SF+++++ WL+E+++HAP
Sbjct: 62 TAGMERYRTIYNSYYHSAHGVMCVYDMTNEKSFENLEKYWLKEIKQHAP 110
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 87.0 bits (206), Expect = 2e-17
Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGS-ADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQ 554
LKV+L+GDS GK +L +DG+ ++ F S G Y+ I + K+VKLQ+WDT+GQ
Sbjct: 3 LKVMLLGDSCTGKTCLLIRYKDGAFLNNNFISTVGIDYRNKLITMGDKKVKLQIWDTAGQ 62
Query: 555 GRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
RF ++ SY R A +LLVYDI N+ SF++ WL +++++
Sbjct: 63 ERFRSVTTSYYRDADALLLVYDIANRASFENCRNWLSQIKEY 104
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 87.0 bits (206), Expect = 2e-17
Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGS-ADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQ 554
LKV+L+GDS GK +L +DG+ ++ F S G Y+ I + K+VKLQ+WDT+GQ
Sbjct: 3 LKVMLLGDSCTGKTCLLIRYKDGAFLNNNFISTVGIDYRNKLITMGDKKVKLQIWDTAGQ 62
Query: 555 GRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
RF ++ SY R A +LLVYDI N+ SF++ WL +++++
Sbjct: 63 ERFRSVTTSYYRDADALLLVYDIANRASFENCRNWLSQIKEY 104
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 85.8 bits (203), Expect = 4e-17
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Frame = +3
Query: 366 KSYDYLLKVLLVGDSDVGKQEILQDLEDG--SADSPFCSGSGYKTTTILLDGKRVKLQLW 539
+ Y YL KV+LVG++ VGK +++ G G + T+ + ++KLQ+W
Sbjct: 2 EDYKYLFKVVLVGNAGVGKTCLVRKFTQGIFPPGQSATIGVDFMIKTVKVGNDKIKLQIW 61
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
DT+GQ RF +I +SY R A I+LVYD++ + SFD + WL E+E +A
Sbjct: 62 DTAGQERFRSITQSYYRSAHAIVLVYDVSCQPSFDCLPEWLGEIESYA 109
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 83.8 bits (198), Expect = 1e-16
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDT 545
Y YL K++L+G+ VGK +L + + S G + T I ++GK VK+Q+WDT
Sbjct: 5 YYYLFKIVLIGNPGVGKSNLLSRFTRNEFNLKSKPTIGVEFATKIISVEGKAVKVQIWDT 64
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+G RF SY RGA G LLVYDI+ +++S+++WL+ + HA
Sbjct: 65 AGMERFRCGASSYYRGALGALLVYDISKHKTYESVEQWLKVLRDHA 110
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 751 DAEMYAAKNHMAFFEVSPLCDFNIREKFCEL 843
+A++YA +NH++F E S L + N+ F +
Sbjct: 133 EAKIYAERNHISFIETSALDNTNVEAAFTNI 163
>Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical
protein D2013.1 protein.
Length = 229
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSA---DSPFCSGSGYKTTTILLDGKRVKLQLWD 542
+ Y +++++GDS VGK +L+ +G P Y L G RVKLQLWD
Sbjct: 14 FHYQYRLIVIGDSTVGKSSLLRYFTEGKMAEISDPTVGVDFYARMIELRPGYRVKLQLWD 73
Query: 543 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHAPG 689
T+GQ +F +I +SY R + G+L +YD TN+ SF+ ++ W++E + G
Sbjct: 74 TAGQEKFRSITKSYYRNSVGVLAIYDTTNRESFEHVENWVKEAALNLGG 122
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 83.4 bits (197), Expect = 2e-16
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLD---------GK 518
YDYL+K L +GDS VGK L D + F S G +K ++ G+
Sbjct: 4 YDYLIKFLALGDSGVGKTSFLHRYTDNTFTGQFISTVGIDFKEKKVVYKSSRGGFGGRGQ 63
Query: 519 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
RV LQLWDT+GQ RF ++ ++ R A G +L++DITN+ SF +I WL +++ HA
Sbjct: 64 RVLLQLWDTAGQERFRSLTTAFFRDAMGFILIFDITNEQSFLNIRDWLSQLKVHA 118
>AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family
protein 18, isoform a protein.
Length = 193
Score = 83.4 bits (197), Expect = 2e-16
Identities = 32/68 (47%), Positives = 52/68 (76%)
Frame = +3
Query: 477 GSGYKTTTILLDGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDR 656
G ++ T++ +DG RVKL +WDT+GQ RF T+ SY RGAQG++ VYD+T++ SF+ ++
Sbjct: 18 GVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNH 77
Query: 657 WLEEVEKH 680
W++EV+ +
Sbjct: 78 WMQEVDTY 85
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 83.4 bits (197), Expect = 2e-16
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLD---------GK 518
YDYL+K L +GDS VGK L D + F S G +K ++ G+
Sbjct: 4 YDYLIKFLALGDSGVGKTSFLHRYTDNTFTGQFISTVGIDFKEKKVVYKSSRGGFGGRGQ 63
Query: 519 RVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
RV LQLWDT+GQ RF ++ ++ R A G +L++DITN+ SF +I WL +++ HA
Sbjct: 64 RVLLQLWDTAGQERFRSLTTAFFRDAMGFILIFDITNEQSFLNIRDWLSQLKVHA 118
>Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical
protein F11A5.4 protein.
Length = 203
Score = 80.2 bits (189), Expect = 2e-15
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = +3
Query: 369 SYDYLLKVLLVGDSDVGKQEILQDLEDGSADS--PFCSGSGYKTTTILLDGKRVKLQLWD 542
S D++ K +++GD VGK +L DS P G + + +D K+VKL +WD
Sbjct: 2 SSDHVFKYVIIGDRGVGKSNLLLRFIGKPFDSIHPSTLGIEFGFRNLEIDRKKVKLHVWD 61
Query: 543 TSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
T GQ RF +++ SY R A G LLVYDIT++ SF ++ WL ++++
Sbjct: 62 TCGQERFRSLVGSYYRHAIGALLVYDITSRESFYHLEHWLTDLQR 106
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 79.0 bits (186), Expect = 4e-15
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +3
Query: 342 TGRPPAAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDG 515
T RP ++ + K++L+G+S VGK ++ G S G+ + T T+ LD
Sbjct: 8 TARPGGPNRTCQF--KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 65
Query: 516 KRVKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHA 683
+K ++WDT+GQ R+ ++ Y RGAQ ++VYDITN+ SF W++E+++ A
Sbjct: 66 ATIKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQESFQKAKNWVKELQRQA 121
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 78.6 bits (185), Expect = 5e-15
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Frame = +3
Query: 375 DYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSG--YKTTTILLDGKRVKLQLWDTS 548
D++ K +++GD VGK +L D D + G + + +D +V+L++WDT
Sbjct: 4 DHMFKYVIIGDGGVGKSNLLLRFTDELFDPIHTTTLGVEFGYKDLQIDKYKVRLRVWDTC 63
Query: 549 GQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
GQ F +IIR+Y R A G LLVYDIT + SF +++WL ++ +H
Sbjct: 64 GQENFRSIIRAYYRNALGALLVYDITCRKSFVHLEQWLSDLRQH 107
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 75.4 bits (177), Expect = 5e-14
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Frame = +3
Query: 381 LLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQ 554
LLKV+++GDS VGK ++ + + + + G+ + T + +D + V LQ+WDT+GQ
Sbjct: 9 LLKVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVNIDDRTVTLQIWDTAGQ 68
Query: 555 GRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEE 668
RF ++ ++ RGA +L +D+TN SF S+D W +E
Sbjct: 69 ERFQSLGVAFYRGADCCVLAFDVTNAASFKSLDSWRDE 106
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 72.5 bits (170), Expect = 4e-13
Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQGR 560
K++ +G+ VGK ++ S D+ + + G + + T+ L+ + V+LQLWDT+GQ R
Sbjct: 12 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 71
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
F ++I SY R + ++VYDITN SF +W+++V
Sbjct: 72 FRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDV 108
>Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical
protein F59B2.7 protein.
Length = 205
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDTSGQGR 560
K++ +G+ VGK I+ S D+ + + G + + T+ L+ + ++LQLWDT+GQ R
Sbjct: 13 KLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 72
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
F ++I SY R + ++VYDITN SF +W+++V
Sbjct: 73 FRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDV 109
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 72.1 bits (169), Expect = 5e-13
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
++++ GD+ VGK + + + P G + T+ +DG+ V LQLWDT+GQ R
Sbjct: 463 RIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQER 522
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
F ++ +SY R A G +LVYD+ + SF + W+E +++
Sbjct: 523 FRSLCKSYFRRADGAILVYDVCAEQSFLRVRDWIETIKE 561
>U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical
protein C56E6.2 protein.
Length = 266
Score = 71.7 bits (168), Expect = 6e-13
Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Frame = +3
Query: 333 HQRTGRPPAAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
H++T APK + KV+++GDS VGK I+ G+ P + G+ + + +
Sbjct: 39 HEQTIATSTAPK---HKAKVVVLGDSGVGKTSIIYRHRYGAHYRPVNATIGASFVSFDVG 95
Query: 507 LDGKR----VKLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVE 674
D + V+LQ+WDT+GQ RF ++ Y R A L+VYD+T++ +F+ +++WL++++
Sbjct: 96 ADYRDREDVVRLQVWDTAGQERFRCMVPMYMRNADAALIVYDVTDRNTFEDVEKWLKDLD 155
Query: 675 K 677
+
Sbjct: 156 R 156
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = +3
Query: 375 DYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKR-VKLQLWDT 545
D + KV+ VGDS VGK L F + G + T+ + R + +QLWDT
Sbjct: 200 DRIFKVVFVGDSAVGKTCFLHRFCHNRFKPLFNATIGVDFTVKTMKIPPNRAIAMQLWDT 259
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
+GQ RF +I + Y R A G++L++D+T++ SF ++ W++ V
Sbjct: 260 AGQERFRSITKQYFRKADGVVLMFDVTSEQSFLNVRNWIDSV 301
>Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical
protein T01B7.3 protein.
Length = 207
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/101 (27%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +3
Query: 378 YLLKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSG 551
+ K++L+G+ VGK ++ + S + ++ T+ ++ + L +WDT+G
Sbjct: 11 FKFKIVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIWDTAG 70
Query: 552 QGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVE 674
Q ++ + Y RG+ G+LLV+DIT++ SF+ + W+ E++
Sbjct: 71 QEKYHALGPIYYRGSNGVLLVFDITDRKSFEKVKNWVLEIK 111
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = +3
Query: 354 PAAPKSYDY--LLKVLLVGDSDVGKQEILQDLEDGS--ADSPFCSGSGYKTTTILLDGKR 521
P++ K+Y KV++VG++ VGK + G + G ++ + +++ +
Sbjct: 89 PSSTKTYKQKRTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENEL 148
Query: 522 VKLQLWDTSGQGRFC-TIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
+++QLWDT+GQ R+ +I+ Y R ++ VYD+T + SF+ + W++E EKH
Sbjct: 149 LRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKECEKH 202
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDT 545
YDYL K+LL+GDS VGK +L D + + S G +K TI LDGK +KLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 546 SG 551
+G
Sbjct: 68 AG 69
>AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical
protein Y71H2AM.12 protein.
Length = 195
Score = 62.5 bits (145), Expect = 4e-10
Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADS-PFCS-GSGYKTTTILL-DGKRVKLQLWDTSGQ 554
+KV++VG+S GK +L D + ++ P + G +K + L DG+ ++LQLWDT+GQ
Sbjct: 7 VKVVVVGESGAGKTALLTCFLDNTFETDPLTTIGIDFKHKIVQLNDGQSIRLQLWDTAGQ 66
Query: 555 GRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
RF + +Y R A+ LLV D++++ + + RW ++K+
Sbjct: 67 ERFRQLAPAYIRSARVALLVIDLSDENCVEHLIRWKGIIDKN 108
>AL032632-1|CAA21582.1| 248|Caenorhabditis elegans Hypothetical
protein Y11D7A.4 protein.
Length = 248
Score = 59.7 bits (138), Expect = 3e-09
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Frame = +3
Query: 375 DYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSG---YKTTTILLDGKRVKLQLWDT 545
D ++K+++VGD GK I Q S D + G + L +V +Q+WD
Sbjct: 33 DKVIKIVVVGDGASGKTSICQRFAKESFDKSYHQTLGLDFFSRRITLPHEMQVLVQVWDI 92
Query: 546 SGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
GQ +I Y GA + LVYD+TN SF++ WL V+K+
Sbjct: 93 GGQSIAGEMIDKYLTGANIVFLVYDVTNSKSFENAVDWLSVVKKN 137
>U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like
protein.
Length = 69
Score = 58.8 bits (136), Expect = 5e-09
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGS-ADSPFCS-GSGYKTTTILLDGKRVKLQLWDT 545
+DYL K++LVGD VGK ++Q +G+ D + G + T+++DGKRVKLQ+WDT
Sbjct: 7 FDYLFKIVLVGDMGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKTLVVDGKRVKLQIWDT 66
Query: 546 SGQ 554
+G+
Sbjct: 67 AGE 69
>U68259-1|AAB16974.1| 69|Caenorhabditis elegans rab14-like
protein.
Length = 69
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 357 AAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGS--ADSPFCSGSGYKTTTILLDGKRVKL 530
AAP +Y Y+ K +++GD VGK +L + AD P G + T I + G+++KL
Sbjct: 3 AAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKL 62
Query: 531 QLWDTSG 551
Q+WDT+G
Sbjct: 63 QIWDTAG 69
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +3
Query: 357 AAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKL 530
A + YD+L K+L++GDS VGK +L D + + + G +K T+ ++G+RVKL
Sbjct: 2 AGTRDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSENYITTIGVDFKIRTMDINGQRVKL 61
Query: 531 QLWDT 545
Q+WDT
Sbjct: 62 QIWDT 66
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILL---DGKRVKLQLWDTSGQG 557
KVL++GD VGK I++ S + + G +L + V LQ+WD SGQ
Sbjct: 13 KVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDENTVVHLQIWDISGQD 72
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
R+ + R Y + A ++V D T + + + RW ++++
Sbjct: 73 RYGVMTRVYYKDAHAAIIVLDSTRERTIEGALRWKTDLDQ 112
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILL---DGKRVKLQLWDTSGQG 557
KVL++GD VGK I++ S + + G +L + V LQ+WD SGQ
Sbjct: 13 KVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDENTVVHLQIWDISGQD 72
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
R+ + R Y + A ++V D T + + + RW ++++
Sbjct: 73 RYGVMTRVYYKDAHAAIIVLDSTRERTIEGALRWKTDLDQ 112
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +3
Query: 348 RPPAAPKSYDYLLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRV 524
RPP Y K++++GD VGK + +Q + D + +DG V
Sbjct: 7 RPPEDDSKLPYY-KLVVIGDGGVGKSSLTIQFFQKQFVDYYDPTIEDQYIQHCEIDGNWV 65
Query: 525 KLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
+ + DT+GQ F + Y RG +G LLV+ +T + SF+ + +V
Sbjct: 66 IMDVLDTAGQEEFSAMREQYIRGGRGFLLVFSVTERKSFEEAHKLYNQV 114
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +3
Query: 348 RPPAAPKSYDYLLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRV 524
RPP Y K++++GD VGK + +Q + D + +DG V
Sbjct: 7 RPPEDDSKLPYY-KLVVIGDGGVGKSSLTIQFFQKQFVDYYDPTIEDQYIQHCEIDGNWV 65
Query: 525 KLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
+ + DT+GQ F + Y RG +G LLV+ +T + SF+ + +V
Sbjct: 66 IMDVLDTAGQEEFSAMREQYIRGGRGFLLVFSVTERKSFEEAHKLYNQV 114
>U68252-1|AAB16967.1| 66|Caenorhabditis elegans rab2-like protein.
Length = 66
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 369 SYDYLLKVLLVGDSDVGKQEILQDLEDGSADS--PFCSGSGYKTTTILLDGKRVKLQLWD 542
SY YL K +++GD+ VGK +L D G + + +DGK++KLQ+WD
Sbjct: 2 SYAYLFKHIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQMWD 61
Query: 543 TSGQ 554
T+GQ
Sbjct: 62 TAGQ 65
>Z71180-2|CAA94890.1| 207|Caenorhabditis elegans Hypothetical
protein F22E12.2 protein.
Length = 207
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFC-SGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
LK + VG++ VGK ++ + + + +L+D K ++LQL DT+GQ
Sbjct: 10 LKCIFVGNAAVGKTSMIVSYTTNVYPHNYVPTAFDNFSVVVLVDKKPIRLQLHDTAGQSS 69
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSID-RWLEEVEKHAPGVQ 695
F T+ A ++VY + + SF+ + W EV K PG +
Sbjct: 70 FDTLRPLCYTDADVFVIVYSVVDLQSFEDVSHHWYPEVTKRNPGTK 115
>U68264-1|AAB16979.1| 66|Caenorhabditis elegans S10-like protein.
Length = 66
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 537 WDTSGQGRFC-TIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKH 680
WDT+GQ R+ +I+ Y R ++ VYD+T + SF+ + W++E EKH
Sbjct: 1 WDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKECEKH 49
>AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-related
gtpase) homologprotein 1 protein.
Length = 213
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +3
Query: 363 PKSYDYLLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLW 539
P + KV++VG VGK + LQ + D + + + ++LDG+ + +
Sbjct: 11 PPQQQVVHKVIMVGTGGVGKSALTLQFMYDEFVEEYEPTKADSYRKKVVLDGEECSIDIL 70
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
DT+GQ + I +Y R +G + V+ I + SF++ + + E++
Sbjct: 71 DTAGQEDYSAIRDNYYRSGEGFICVFSILDMESFEATNEFREQI 114
>Z82276-7|CAB05247.2| 195|Caenorhabditis elegans Hypothetical
protein K03D3.10 protein.
Length = 195
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFC-SGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
+K ++VGD VGK +L + + + +T +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDD 63
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAP 686
+ L+ + + N SF+++ +W EV H P
Sbjct: 64 YDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
K+++VGD VGK + +Q +++ + + +++DG+ L + DT+GQ +
Sbjct: 5 KLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
+ Y R +G LLV+ + SF+++ + E++ +
Sbjct: 65 SAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRR 102
>U55018-1|AAB40386.1| 195|Caenorhabditis elegans CeRac2 protein.
Length = 195
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFC-SGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
+K ++VGD VGK +L + + + +T +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDD 63
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAP 686
+ L+ + + N SF+++ +W EV H P
Sbjct: 64 YDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
K+++VGD VGK + +Q +++ + + +++DG+ L + DT+GQ +
Sbjct: 8 KLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 67
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
+ Y R +G LLV+ + SF+++ + E++ +
Sbjct: 68 SAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRR 105
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLDGKR--VKLQLWDTSGQGR 560
K++LVGD GK ++ G + + + G + ++ R ++ +WDT+GQ +
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEK 70
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
F + Y Q ++++D+T + ++ ++ W ++ +
Sbjct: 71 FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLAR 109
>Z78417-3|CAB01691.1| 195|Caenorhabditis elegans Hypothetical
protein C35C5.4 protein.
Length = 195
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L S + Y + + LDG V L LWDT+GQ
Sbjct: 8 IKCVVVGDGTVGKTCMLISYTTDSFPVQYVPTVFDNY-SAQMSLDGNVVNLGLWDTAGQE 66
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAP 686
+ + +L + + + SFD++ +W+ E+ +H P
Sbjct: 67 DYDRLRPLSYPQTDVFILCFSVVSPVSFDNVASKWIPEIRQHCP 110
>X68492-1|CAA48506.1| 191|Caenorhabditis elegans small ras-related
protein protein.
Length = 191
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L + + Y + +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGRPINLGLWDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKHAP 686
+ +R S + LV + + N SF+++ +W EV H P
Sbjct: 63 DY-DRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>U82288-1|AAC47729.1| 195|Caenorhabditis elegans Rac-like GTPase
protein.
Length = 195
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L S + Y + + LDG V L LWDT+GQ
Sbjct: 8 IKCVVVGDGTVGKTCMLISYTTDSFPVQYVPTVFDNY-SAQMSLDGNVVNLGLWDTAGQE 66
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAP 686
+ + +L + + + SFD++ +W+ E+ +H P
Sbjct: 67 DYDRLRPLSYPQTDVFILCFSVVSPVSFDNVASKWIPEIRQHCP 110
>L04287-1|AAA28141.1| 191|Caenorhabditis elegans rac1 protein
protein.
Length = 191
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L + + Y + +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGRPINLGLWDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKHAP 686
+ +R S + LV + + N SF+++ +W EV H P
Sbjct: 63 DY-DRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>L03711-1|AAA28140.1| 191|Caenorhabditis elegans rac1 protein
protein.
Length = 191
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L + + Y + +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGRPINLGLWDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKHAP 686
+ +R S + LV + + N SF+++ +W EV H P
Sbjct: 63 DY-DRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>AF226867-1|AAF33846.1| 191|Caenorhabditis elegans cell-corpse
engulfment proteinCED-10 protein.
Length = 191
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L + + Y + +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGRPINLGLWDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKHAP 686
+ +R S + LV + + N SF+++ +W EV H P
Sbjct: 63 DY-DRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>AF038608-16|AAC25821.1| 191|Caenorhabditis elegans Cell death
abnormality protein10, isoform b protein.
Length = 191
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L + + Y + +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGRPINLGLWDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKHAP 686
+ +R S + LV + + N SF+++ +W EV H P
Sbjct: 63 DY-DRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCP 106
>U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding
protein protein.
Length = 212
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 381 LLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
+L++++VG VGK + +Q ++ + T +D KL++ DT+GQ
Sbjct: 17 VLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQE 76
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDR 656
F T+ Y R G L+V+ +T++ SF+ + +
Sbjct: 77 EFSTMREQYLRTGSGFLIVFAVTDRNSFEEVKK 109
>U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog
protein.
Length = 212
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 381 LLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
+L++++VG VGK + +Q ++ + T +D KL++ DT+GQ
Sbjct: 17 VLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQE 76
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDR 656
F T+ Y R G L+V+ +T++ SF+ + +
Sbjct: 77 EFSTMREQYLRTGSGFLIVFAVTDRNSFEEVKK 109
>CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical
protein C44C11.1b protein.
Length = 168
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 381 LLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
+L++++VG VGK + +Q ++ + T +D KL++ DT+GQ
Sbjct: 17 VLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQE 76
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDR 656
F T+ Y R G L+V+ +T++ SF+ + +
Sbjct: 77 EFSTMREQYLRTGSGFLIVFAVTDRNSFEEVKK 109
>CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical
protein C44C11.1a protein.
Length = 212
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 381 LLKVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
+L++++VG VGK + +Q ++ + T +D KL++ DT+GQ
Sbjct: 17 VLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQE 76
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDR 656
F T+ Y R G L+V+ +T++ SF+ + +
Sbjct: 77 EFSTMREQYLRTGSGFLIVFAVTDRNSFEEVKK 109
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEI-LQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
KV+++G VGK + +Q + + + + I +DG+ L++ DT+G +F
Sbjct: 5 KVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAGTEQF 64
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
++ Y + QG ++VY IT++ +F I E++
Sbjct: 65 SSMRDLYIKNGQGFVVVYSITSQQTFHDIRNMKEQI 100
>U68262-1|AAB16977.1| 74|Caenorhabditis elegans RAM1-like protein.
Length = 74
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Frame = +3
Query: 372 YDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLD---------GK 518
YDYL+K L GD VGK L D + F S G +K ++ + G+
Sbjct: 4 YDYLIKFLAPGDPGVGKTSFLHRYTDNTFTGQFISTVGIDFKEKKVVYESSRGGFGGRGQ 63
Query: 519 RVKLQLWDTSG 551
RV LQ+WDT+G
Sbjct: 64 RVLLQIWDTAG 74
>AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylation
factor related(20.5 kD) (arf-3) protein.
Length = 180
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
+++L+VG GK IL L+ G + + G+ T+ + K + +WD GQ +
Sbjct: 18 VRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVETV--EYKNISFTVWDVGGQDKI 74
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
+ R Y + QG++ V D +K + I+ EE+ K
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDK---ERIEESREELHK 109
>AL117204-37|CAB55148.2| 248|Caenorhabditis elegans Hypothetical
protein Y116A8C.10b protein.
Length = 248
Score = 41.9 bits (94), Expect = 6e-04
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTT---TILL----------DGKRVK 527
K+L++GDS VGK + + G P G + +T T+++ + +
Sbjct: 10 KILVLGDSCVGKTSLCHCIAGGG--EPPGGGRSFDSTIGATVVMAWHEYRAGTPEQRTEL 67
Query: 528 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWL 662
L+LWD G + + GA G +LV+D+TNK S +++ WL
Sbjct: 68 LELWDIGGMVAHRQAAQVFFEGAVGAILVHDLTNKRSEENLATWL 112
>AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 3 protein.
Length = 180
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
+++L+VG GK IL L+ G + + G+ T+ + K + +WD GQ +
Sbjct: 18 VRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVETV--EYKNISFTVWDVGGQDKI 74
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
+ R Y + QG++ V D +K + I+ EE+ K
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDK---ERIEESREELHK 109
>L36965-1|AAC37216.1| 192|Caenorhabditis elegans guanine nucleotide
regulatory proteinprotein.
Length = 192
Score = 41.5 bits (93), Expect = 8e-04
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDL-EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
K+++VGD GK +L +D D + I +DGK+V+L LWDT+GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAPGV 692
+ IL+ + I + S ++I ++W EV P V
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNV 110
>AL132952-3|CAB63379.1| 192|Caenorhabditis elegans Hypothetical
protein Y51H4A.3 protein.
Length = 192
Score = 41.5 bits (93), Expect = 8e-04
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDL-EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
K+++VGD GK +L +D D + I +DGK+V+L LWDT+GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 564 CTIIRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHAPGV 692
+ IL+ + I + S ++I ++W EV P V
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNV 110
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDG---SADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
K++++G VGK + G P S K + DG++ L++ DT+G
Sbjct: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DGQQCMLEILDTAGTE 62
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSI 650
+F + Y + QG +LVY IT + +F+ +
Sbjct: 63 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDL 93
>U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 1.2 protein.
Length = 181
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGRF 563
+++L+VG GK IL L+ G + + G+ T+ + K + +WD GQ +
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVETV--EYKNISFTVWDVGGQDKI 74
Query: 564 CTIIRSYSRGAQGILLVYDITNK 632
+ R Y + QG++ V D ++
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDR 97
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/97 (21%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQGR 560
K++++G+ VGK + G + + Y+ + +D + +L++ DT+G +
Sbjct: 5 KIVVLGNGGVGKSALTLQYVQGIFVHTYDATIEDSYRKLS-KVDAENARLEILDTAGTEQ 63
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
F + +Y R AQG +LV+ + +F+++ + ++
Sbjct: 64 FTGMRETYYRTAQGFVLVFSLAETSTFENLKQTFTDI 100
>Z93378-2|CAB07583.1| 184|Caenorhabditis elegans Hypothetical
protein F19H8.3 protein.
Length = 184
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDL--EDGSADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQG 557
+++LL+G + GK IL+ L ED +P G KT + D ++L +WD GQ
Sbjct: 18 IRILLLGLDNAGKTTILKQLSSEDVQHVTP-TKGFNVKTVAAMGD---IRLNVWDIGGQR 73
Query: 558 RFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
+Y ++ V D +K FD ++ L E+
Sbjct: 74 SIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGEL 111
>Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical
protein F08G12.1 protein.
Length = 635
Score = 31.1 bits (67), Expect(2) = 0.009
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHAP 686
DT+ RF + + G G++ V+DIT W+++ + + + +V P
Sbjct: 132 DTACDARFVDVYK----GTNGVIFVFDITKTWTWEYVQKEIVKVPNKIP 176
Score = 25.8 bits (54), Expect(2) = 0.009
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Frame = +3
Query: 273 QQTINGQVVQNGSTTLPRSHHQRTGRPPAAP--KSYDYLLKVLLVGDSDVGKQEILQDLE 446
++ + G +N ST +P S QR + Y LK+++ GD +VGK + + L+
Sbjct: 6 RKKLGGDKEENKSTVMP-SGVQRVDAELQRKFARGVQYNLKIVIRGDRNVGKTCLWKRLQ 64
Query: 447 DGSADSPFCSGSGYKTTTILLDGKR----VKLQLWDTSGQ 554
S + + + I + + VK+ +WD Q
Sbjct: 65 GLSFQEEYVATEEIQVANINWNYRATDDVVKVDVWDIVDQ 104
>U68263-1|AAB16978.1| 115|Caenorhabditis elegans rab-like protein.
Length = 115
Score = 36.3 bits (80), Expect = 0.029
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +3
Query: 333 HQRTGRPPAAPKSYDYLLKVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTIL 506
H++T APK + KV+++GDS VGK I+ G+ P + G+ + + +
Sbjct: 39 HEQTIATSTAPK---HKAKVVVLGDSGVGKTSIIYRHRYGAHYRPVNATIGASFVSFDVG 95
Query: 507 LDGKR----VKLQLWDTSGQ 554
D + V+LQ+WDT+GQ
Sbjct: 96 ADYRDREDVVRLQMWDTAGQ 115
>U23452-10|AAK31543.1| 191|Caenorhabditis elegans Hypothetical
protein R07G3.1 protein.
Length = 191
Score = 35.9 bits (79), Expect = 0.038
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L S + Y T+++ G+ L L+DT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKH 680
+ +R S + LV + + SF+++ ++W+ E+ H
Sbjct: 63 DY-DRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHH 104
>L10078-1|AAA51433.1| 188|Caenorhabditis elegans guanine nucleotide
regulatory proteinprotein.
Length = 188
Score = 35.9 bits (79), Expect = 0.038
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQG 557
+K ++VGD VGK +L S + Y T+++ G+ L L+DT+GQ
Sbjct: 1 MKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 59
Query: 558 RFCTIIRSYSRGAQGILLV-YDITNKWSFDSI-DRWLEEVEKH 680
+ +R S + LV + + SF+++ ++W+ E+ H
Sbjct: 60 DY-DRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHH 101
>AL021475-2|CAA16313.1| 187|Caenorhabditis elegans Hypothetical
protein Y32F6B.3 protein.
Length = 187
Score = 35.9 bits (79), Expect = 0.038
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGS-ADSPFCSGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
LK+++VGD+ GK +L D+ + ++ +D K + L+DT+GQG
Sbjct: 5 LKLVVVGDTYTGKTSLLVAYTKKQFLDNYTTTVFDNWAVSVHIDNKNYAVNLFDTAGQGN 64
Query: 561 FCTI-IRSYSRGAQGILLVYDITNKWSFDSI-DRWLEEVEKHA 683
+ I SY A L+ + + ++ + +S W+ E+ K+A
Sbjct: 65 YEQIRCLSYPH-ANVFLVCFSMIDRKTLESCRSTWIPEIRKYA 106
>AF038608-15|AAC25820.1| 129|Caenorhabditis elegans Cell death
abnormality protein10, isoform a protein.
Length = 129
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSPFCSG--SGYKTTTILLDGKRVKLQLWDTSGQ 554
+K ++VGD VGK +L + + Y + +++DG+ + L LWDT+GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGRPINLGLWDTAGQ 61
>U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein.
Length = 67
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 387 KVLLVGDSDVGKQEILQDLEDGSADSPFCS--GSGYKTTTILLDGKRVKLQLWDTS 548
+++ +G+ VGK ++ S D+ + + G + + T+ L+ + V+LQ+WDT+
Sbjct: 12 ELVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQMWDTA 67
>Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical
protein F54C8.5 protein.
Length = 207
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 528 LQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEV 671
L++ DT+GQ + RS S G +LVY I ++ SF+ E++
Sbjct: 63 LRVTDTAGQQEYTVFPRSCSLDINGFILVYAIDDRKSFEMCSNIYEKI 110
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 384 LKVLLVGDSDVGKQEILQDLEDGSADSP-FCSGSGYKTTTILLDGKRVKLQLWDTSGQGR 560
+ +++VG + GK IL L+ S G+ T + + +D +GQ +
Sbjct: 18 VNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNF--STQNLSFHAFDMAGQMK 75
Query: 561 FCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEKHAPGVQK 698
+ + SY +QG++ V D +++ + + L V +H V +
Sbjct: 76 YRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSR 121
>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
F10F2.2 protein.
Length = 1343
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 399 VGDSDV-GKQEILQDLEDGSADSPFCSGSGYKTTTILLDG-KRVKLQLWDTSGQGRF 563
+GD + G L + E G DS F K +I+L G + L LW + G+GRF
Sbjct: 1177 IGDEEQKGPTVFLDENECGRFDSSFGPVKIEKNVSIMLSGMENSVLGLWSSHGEGRF 1233
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 781 CDSLQHTFQHPVLVLAVESEV*PIPDQN 698
CD+ H HP ++L V + + P PD N
Sbjct: 696 CDTHTHCEIHPAMILGVCASIIPFPDHN 723
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 781 CDSLQHTFQHPVLVLAVESEV*PIPDQN 698
CD+ H HP ++L V + + P PD N
Sbjct: 497 CDTHTHCEIHPAMILGVCASIIPFPDHN 524
>Z74043-1|CAA98547.1| 368|Caenorhabditis elegans Hypothetical
protein T19B10.2 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +3
Query: 336 QRTGRPPAAPKSYDYLLKVLLVG-DSDVGKQEI-LQDLEDGSADSPFCSG--SGYKTTTI 503
Q P A S+ L+ + G D+D G E +++ +A + F S G +
Sbjct: 17 QDCSTPAATRASFGSYLQCIKEGLDADYGNYENEIREHSKKAAATCFASTIEEGNQKDRC 76
Query: 504 LLDGKRVKLQLWDTSGQGRFCTIIRSYSRGA 596
+L + WD +G R C+I R+++ GA
Sbjct: 77 VLAANDLSHNAWDKNGPLRECSICRTFAAGA 107
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 381 LLKVLLVGDSDVGKQEILQDLEDG 452
LLKV+++GDS VGK ++ E G
Sbjct: 9 LLKVIILGDSGVGKTSLMNQYEIG 32
>Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical
protein T28F3.6 protein.
Length = 252
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 525 KLQLWDTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEE-VEK 677
++QLWD SG ++ + A+G++LV + D + +W E VEK
Sbjct: 114 EIQLWDVSGDKKYEDCWPAIKENAEGVILVVNPEEHKGSD-LQQWFYEFVEK 164
>Z37093-6|CAJ85783.1| 176|Caenorhabditis elegans Hypothetical
protein ZK669.5b protein.
Length = 176
Score = 28.3 bits (60), Expect = 7.7
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 363 PKSYDYLLKVLLVGDSDVGKQEILQDL-EDGSADSPFCSGSGYKTTTILLDGKRVKLQLW 539
P SYD + K L+ G VGK+ +L+ +G +S + T++ +D ++V ++
Sbjct: 5 PTSYDRVFKFLIFGGKSVGKKTLLRSFCTEGDNESIW--------TSLTVDDEKVLIEA- 55
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
T Q S+ I LV+ T+ +SF+ E++K
Sbjct: 56 -TVSQ----KWEEGMSKEHDAIALVFSTTDVYSFEYTLELYNEIQK 96
>Z37093-5|CAJ85782.1| 212|Caenorhabditis elegans Hypothetical
protein ZK669.5a protein.
Length = 212
Score = 28.3 bits (60), Expect = 7.7
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 363 PKSYDYLLKVLLVGDSDVGKQEILQDL-EDGSADSPFCSGSGYKTTTILLDGKRVKLQLW 539
P SYD + K L+ G VGK+ +L+ +G +S + T++ +D ++V ++
Sbjct: 5 PTSYDRVFKFLIFGGKSVGKKTLLRSFCTEGDNESIW--------TSLTVDDEKVLIEA- 55
Query: 540 DTSGQGRFCTIIRSYSRGAQGILLVYDITNKWSFDSIDRWLEEVEK 677
T Q S+ I LV+ T+ +SF+ E++K
Sbjct: 56 -TVSQ----KWEEGMSKEHDAIALVFSTTDVYSFEYTLELYNEIQK 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,046,665
Number of Sequences: 27780
Number of extensions: 430973
Number of successful extensions: 1182
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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