Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D01
         (881 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KNS4 Cluster: DNA ligase; n=1; Filobasidiella neoform...    37   0.78 
UniRef50_Q0D6X0 Cluster: Os07g0429600 protein; n=6; Oryza sativa...    35   3.2  
UniRef50_A0BRD7 Cluster: Chromosome undetermined scaffold_122, w...    34   5.5  
UniRef50_A7GHJ0 Cluster: Putative uncharacterized protein; n=3; ...    33   9.6  
UniRef50_A6BKE6 Cluster: Putative uncharacterized protein; n=2; ...    33   9.6  

>UniRef50_Q5KNS4 Cluster: DNA ligase; n=1; Filobasidiella
           neoformans|Rep: DNA ligase - Cryptococcus neoformans
           (Filobasidiella neoformans)
          Length = 944

 Score = 36.7 bits (81), Expect = 0.78
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +3

Query: 231 SGLMSEFTKSEWKKVSEGG--AMETCHKLYTWVNHTVLMLLFQIFWKVSQISDYLKGRSV 404
           SGL +   K  W+K  + G  A E  +KL T V    L L  +++ K+ +I+  +KG + 
Sbjct: 275 SGLQARDLKHLWQKYGDPGDVAFEAKNKLRTLVQPAPL-LAGEVYDKLLEIAK-VKGSNS 332

Query: 405 EKPKNELQFDILAANKGNEVQ 467
            K KNEL   +L   KG EV+
Sbjct: 333 GKIKNELVRKLLIRAKGEEVR 353


>UniRef50_Q0D6X0 Cluster: Os07g0429600 protein; n=6; Oryza
           sativa|Rep: Os07g0429600 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 107

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 568 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 440
           S T A CG C S   K  CVGC +   ++  C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCVGCIAAGGSNSVCKNTCRFPCILA 66


>UniRef50_A0BRD7 Cluster: Chromosome undetermined scaffold_122,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_122,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 679

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 237 LMSEFTKSEWKKVSEGGAMETCHKLYTWVNHTVLMLLFQIFWKVSQISDYLKGRSVEKPK 416
           L   F ++ W+KV +   +   H++   ++H   +  F  +WK   I+ YL+ + V+K  
Sbjct: 164 LSPTFNENSWQKVDKVNRINLAHEVQKEIHH---LERFNTYWKPDMINQYLQLKIVQKGV 220

Query: 417 N 419
           N
Sbjct: 221 N 221


>UniRef50_A7GHJ0 Cluster: Putative uncharacterized protein; n=3;
           Clostridium botulinum|Rep: Putative uncharacterized
           protein - Clostridium botulinum (strain Langeland / NCTC
           10281 / Type F)
          Length = 196

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 283 PSLTFFHSLFVNSLISPDRIPIPVARSTNLNKTVQN 176
           P +T FH LFV ++I P ++PI V   +  +K + N
Sbjct: 93  PEITIFHILFVFAMIDPIKLPIGVIPISTPSKKIDN 128


>UniRef50_A6BKE6 Cluster: Putative uncharacterized protein; n=2;
           Clostridiales|Rep: Putative uncharacterized protein -
           Dorea longicatena DSM 13814
          Length = 442

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 YTWVNHTVLMLLFQIFWKVSQISDYLKGRSVEKPK 416
           YTWVN    +L   + + V+ I DY +G  V KP+
Sbjct: 337 YTWVNELCQVLSENVDYAVNHIRDYYRGIEVSKPQ 371


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,174,735
Number of Sequences: 1657284
Number of extensions: 16663523
Number of successful extensions: 39641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39623
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)