Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D01
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    30   0.38 
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    29   0.66 
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.2  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   6.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.2  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   8.2  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   8.2  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 577 VCPSRTLAGCGYCPSENGKTVCVGC 503
           VC + T AG G+C    G   C GC
Sbjct: 64  VCKNGTCAGDGFCNGTGGSASCTGC 88


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +1

Query: 424 FSLTFSPLTKEMKFKRHI---RSMSDVQNS 504
           FSLT +P  K  KFKR +   RS+S +QN+
Sbjct: 837 FSLTLTPPQKPQKFKRDLNVQRSLSPIQNA 866


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 634 SRSSQTNPSIGTLRRSFWCVCPSRTLAGCGYC 539
           S  ++   S G  R  FW    ++TL G G+C
Sbjct: 30  SHLTEEKDSDGKSRAKFWGTLDTKTLGGAGFC 61


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 292 IAPPSLTFFHSLFVNSLISPDRIPIPVARSTNLNKTVQNRAPASKRK 152
           +APPSL    S+++ +   P +IP+   +   L  +  N    S+R+
Sbjct: 74  MAPPSLRNRSSVYLPTPAGPPQIPVNTGKRYTLTSSSANYMTKSERQ 120


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 643 IRSSRSSQTNPSIGTLRRSFWCVCPSRTLAGCGYCPSE 530
           +RS+RSS   P+   + ++   V P+R     G+CP +
Sbjct: 50  VRSARSSMEQPTFRPVAKNSVTVAPAR---AAGFCPPQ 84


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 764 DITSGIFFSIWTKYXXXXXKTHKXLHFYIDD 856
           DI+S IF+S+W +      +  K   ++I+D
Sbjct: 361 DISSAIFYSVWNQSIAAIIRREKVDIYHIND 391


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 643 IRSSRSSQTNPSIGTLRRSFWCVCPSRTLAGCGYCPSENGKTVCVGCYSGR 491
           +RS   S +N S   L  +  C     T+ G  +    N  T+CV C+  R
Sbjct: 151 LRSCNISISNCSSVNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFR 201


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 772 RDIDLASEXDCTASSIRSIALQYSHGIR 689
           ++I+  S+  CT   + SI L +SHGI+
Sbjct: 315 KEINFYSKILCTFVLVLSIGLTFSHGIK 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,413,441
Number of Sequences: 5004
Number of extensions: 70467
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)