Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D01
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0133 + 14053076-14053280,14053524-14053642                       35   0.099
07_03_0141 + 14249788-14249992,14250240-14250295                       32   0.53 
07_03_0140 + 14238645-14238849,14239081-14239163                       32   0.53 
07_03_0134 + 14064515-14064719,14064962-14065044                       31   1.2  
06_01_1138 - 9429447-9433868                                           29   3.7  
06_03_0091 - 16515330-16515548,16515669-16515779,16517483-165175...    29   6.5  

>07_03_0133 + 14053076-14053280,14053524-14053642
          Length = 107

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 568 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 440
           S T A CG C S   K  CVGC +   ++  C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCVGCIAAGGSNSVCKNTCRFPCILA 66


>07_03_0141 + 14249788-14249992,14250240-14250295
          Length = 86

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 568 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 440
           S T A CG C S   K  C GC +   +   C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCFGCIAAGGSDSICKNTCCFPCILA 66


>07_03_0140 + 14238645-14238849,14239081-14239163
          Length = 95

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 568 SRTLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 440
           S T A CG C S   K  C GC +   +   C +   FP + A
Sbjct: 24  SATAAQCGCCISSRAKACCFGCIAAGGSDSVCKNTCCFPCILA 66


>07_03_0134 + 14064515-14064719,14064962-14065044
          Length = 95

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 562 TLAGCGYCPSENGKTVCVGCYSGRRTSI*CAS*TSFPLLAA 440
           T A CG C S   K  C GC +   +   C +   FP + A
Sbjct: 26  TAAQCGCCISSRAKACCFGCIAAGGSDSVCKNTCCFPCILA 66


>06_01_1138 - 9429447-9433868
          Length = 1473

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -1

Query: 485  IDLMCLLNFISFVSGENVKLKLVLWLLYRPPLQIVRYLTDLPEYLEK*HENCMVDPCVQF 306
            ++   ++N ISF  G   KL+ ++W   R    ++  + +LPE+ E       V   V+ 
Sbjct: 1369 VECSTIIN-ISFADGSAPKLEKIVWHFSRKDFCLLSGIANLPEFKELEFNGDFVPDKVRK 1427

Query: 305  MAGLH-RAPLTNFFPLTFRKFTHQPGPYP 222
                H R P+     LT +K  H  GP P
Sbjct: 1428 AINAHKRKPI-----LTHKKPQHH-GPAP 1450


>06_03_0091 -
           16515330-16515548,16515669-16515779,16517483-16517524,
           16518067-16518181,16518820-16518914,16519916-16520015,
           16521169-16521264,16522276-16522349,16524581-16524629,
           16525414-16525483,16525553-16525652,16525721-16525779,
           16526633-16526684,16527199-16527405
          Length = 462

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 243 SEFTKSEWKKVSEGGAMETCH 305
           +EF K EW  +++ G++E CH
Sbjct: 300 AEFLKEEWNYLNKTGSLEDCH 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,490
Number of Sequences: 37544
Number of extensions: 462328
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)