Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D01
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical ...    33   0.36 
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    31   0.83 
U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone...    31   0.83 
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    31   0.83 
Z68752-11|CAM82780.1|  324|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z68752-10|CAA92986.1|  354|Caenorhabditis elegans Hypothetical p...    29   3.3  
AL023840-2|CAM82781.1|  324|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL023840-1|CAA19510.1|  354|Caenorhabditis elegans Hypothetical ...    29   3.3  
U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    28   7.7  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    28   7.7  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    28   7.7  

>AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical
           protein H23L24.3b protein.
          Length = 707

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = -2

Query: 253 VNSLISPDRIPIPVARSTNLNKTVQNRAPA 164
           V+  + P+++PIP+ RS++L+  ++NR P+
Sbjct: 78  VSLQVEPNKLPIPLTRSSSLSSIMENRPPS 107


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 534 PRTVRQSVWGAILDVGHRSDVPLELHFLC*RRECQTEARSLASLQTSPSNSP 379
           PR V+  +  A       + V +E+H      ECQTE  +++S  TSPS  P
Sbjct: 97  PRAVQGDIDTASTSSASPNLVSVEMHPYTKEVECQTEVSTISSHPTSPSTLP 148


>U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform a protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 534 PRTVRQSVWGAILDVGHRSDVPLELHFLC*RRECQTEARSLASLQTSPSNSP 379
           PR V+  +  A       + V +E+H      ECQTE  +++S  TSPS  P
Sbjct: 97  PRAVQGDIDTASTSSASPNLVSVEMHPYTKEVECQTEVSTISSHPTSPSTLP 148


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 534 PRTVRQSVWGAILDVGHRSDVPLELHFLC*RRECQTEARSLASLQTSPSNSP 379
           PR V+  +  A       + V +E+H      ECQTE  +++S  TSPS  P
Sbjct: 109 PRAVQGDIDTASTSSASPNLVSVEMHPYTKEVECQTEVSTISSHPTSPSTLP 160


>Z68752-11|CAM82780.1|  324|Caenorhabditis elegans Hypothetical
           protein T12G3.7b protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 295 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 140
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 54  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 102


>Z68752-10|CAA92986.1|  354|Caenorhabditis elegans Hypothetical
           protein T12G3.7a protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 295 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 140
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 84  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 132


>AL023840-2|CAM82781.1|  324|Caenorhabditis elegans Hypothetical
           protein T12G3.7b protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 295 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 140
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 54  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 102


>AL023840-1|CAA19510.1|  354|Caenorhabditis elegans Hypothetical
           protein T12G3.7a protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 295 SIAPPSLTFFHSLFVNSLISPDRI-PIPVARSTNLNKTVQNRAPASKRKGSLT 140
           S  PP+LT   S   N  I+PD++ PIPVA +  +   ++++    K++  LT
Sbjct: 84  STTPPTLTLLSST-ANLTIAPDQVAPIPVATNATI---IESKTENEKKEELLT 132


>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 534 PRTVRQSVWGAILDVGHRSDVPLELHFLC*RRE--CQTEARSLASLQTSPSNSP 379
           PR V+  +  A       + V +E+H     RE  CQTE  +++S  TSPS  P
Sbjct: 49  PRAVQGDIDTASTSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTLP 102


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 534 PRTVRQSVWGAILDVGHRSDVPLELHFLC*RRE--CQTEARSLASLQTSPSNSP 379
           PR V+  +  A       + V +E+H     RE  CQTE  +++S  TSPS  P
Sbjct: 89  PRAVQGDIDTASTSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTLP 142


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 534 PRTVRQSVWGAILDVGHRSDVPLELHFLC*RRE--CQTEARSLASLQTSPSNSP 379
           PR V+  +  A       + V +E+H     RE  CQTE  +++S  TSPS  P
Sbjct: 49  PRAVQGDIDTASTSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTLP 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,008,294
Number of Sequences: 27780
Number of extensions: 400479
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)