Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C24
         (918 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   1.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.8  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 663 GVWVWVXXXXAAXXCXAXG 607
           G+WVW+    A   C A G
Sbjct: 131 GIWVWLINISATYICYAFG 149


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 663 GVWVWVXXXXAAXXCXAXG 607
           G+WVW+    A   C A G
Sbjct: 364 GIWVWLINISATYICYAFG 382


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 663 GVWVWVXXXXAAXXCXAXG 607
           G+WVW+    A   C A G
Sbjct: 364 GIWVWLINISATYICYAFG 382


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 689 PLXXXPPXPXPXXXPP 736
           PL   PP P P   PP
Sbjct: 176 PLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,354
Number of Sequences: 336
Number of extensions: 1403
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)