Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C24
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.075
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.23
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.014
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 624 PXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPP 782
P PP P P P P PPP P PP P P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP---PPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 681 PXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPPXXXXPGXPP 809
P P P P PP P P PPP G PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 29.1 bits (62), Expect = 0.92
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Frame = +3
Query: 648 PKPXPPXXXXGPXPXXXXXPPPR-----XPXXXPPXXXXTXXPXPXRPPPXXXXPG 800
P P P P P PPP P PP P P PPP G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = +3
Query: 609 PXPXXPXPPXXXXPKPXPP-XXXXGPXPXXXXXPPP 713
P P P P P P PP G P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.075
Identities = 19/73 (26%), Positives = 20/73 (27%)
Frame = +3
Query: 591 GXSXXPPXPXXPXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPX 770
G S PP P P P P P P R PP + P
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Query: 771 RPPPXXXXPGXPP 809
P P P PP
Sbjct: 417 VPTPPSLPPSAPP 429
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/107 (21%), Positives = 24/107 (22%)
Frame = +3
Query: 489 PKXXXXGPXXNHRPXXXPIXXGKXXXTTPXXAXXGXSXXPPXPXXPXPPXXXXPKPXPPX 668
P P +P P A G S P P P PP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 669 XXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPPXXXXPGXPP 809
P PP P P P PP P PP
Sbjct: 423 LPPSAPPSLPPSAPPSLP-MGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/97 (23%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Frame = +3
Query: 525 RPXXXPIXXGKXXXTTPXXAXXGXSXXPPXPXXPXPPXXXXPKPXPPXXXXGPXPXXXXX 704
RP P + P S PP P P P PP P P
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS-NAAGSIPLPPQGRSAPPPPPPRS 368
Query: 705 PPP--RXPXXXPPXXXXTXXPXPXRPPPXXXXPGXPP 809
P R P + P P P P PP
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.17
Identities = 28/125 (22%), Positives = 32/125 (25%)
Frame = +3
Query: 435 PXKAXRGVPXAGPXTXTSPKXXXXGPXXNHRPXXXPIXXGKXXXTTPXXAXXGXSXXPPX 614
P A G+P + +P P + P G P A
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPV----PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139
Query: 615 PXXPXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPPXXXX 794
P P P P P P P P P P PP P PPP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV-PPPSEAP 1198
Query: 795 PGXPP 809
P P
Sbjct: 1199 PVPKP 1203
Score = 29.1 bits (62), Expect = 0.92
Identities = 17/67 (25%), Positives = 17/67 (25%)
Frame = +3
Query: 609 PXPXXPXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPPXX 788
P P P P P P P P P P P P PP
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Query: 789 XXPGXPP 809
G PP
Sbjct: 1087 APSGIPP 1093
Score = 29.1 bits (62), Expect = 0.92
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Frame = +3
Query: 633 PXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRP----PPXXXXPG 800
P P P P P P P P+ PP + P +P PP G
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 801 XPP 809
PP
Sbjct: 1139 APP 1141
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/67 (25%), Positives = 17/67 (25%)
Frame = +3
Query: 606 PPXPXXPXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPPX 785
P P P P PP P P PP P P P P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Query: 786 XXXPGXP 806
P P
Sbjct: 1234 AKAPPVP 1240
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +3
Query: 606 PPXPXXPXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPPX 785
P P PP P P P P PP P P P P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Query: 786 XXXP 797
P
Sbjct: 1244 SEAP 1247
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +3
Query: 597 SXXPPXPXXPXPPXXXXPKPXPPXXXXGPXPXXXXXP--PPRXPXXXPPXXXXTXXPXP 767
S P P PP P P PP P P P PP P P P P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = +3
Query: 708 PPRXPXXXPPXXXXTXXPXPXRPPPXXXXPGXPP 809
PP+ PP + P P PP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +2
Query: 680 PXXPLXXXPPXPXPXXXPPPPXXXXXPPXRXP 775
P P PP PPPP PP P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = -3
Query: 808 GGXPGXXXXGGGRXGXGXXVXXXXGGXXXGXRGGGXXXXXGXGPXXXXGGXGLGXXXXGG 629
GG G G G G GG G G GP GG G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 628 XGXXGXGGXXDXP 590
G G GG P
Sbjct: 247 FG-GGLGGFGGGP 258
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/79 (26%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Frame = +3
Query: 570 TPXXAXXGXSXXPPXPXXPXP-PXXXXPKPX--PPXXXXGPXPXXXXXPPPRXPXXXPPX 740
TP + PP P P P P P P PP P P P P
Sbjct: 132 TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Query: 741 XXXTXXPXPXRPPPXXXXP 797
P PPP P
Sbjct: 192 SAVPPMPPKVPPPPLSQAP 210
Score = 27.1 bits (57), Expect = 3.7
Identities = 26/118 (22%), Positives = 30/118 (25%), Gaps = 1/118 (0%)
Frame = +3
Query: 456 VPXAGPXTXTSPKXXXXGPXXNHRPXXXPIXXGKXXXTTPXXAXXGXSXXPPXPXXPXPP 635
VP P TS P + G + P P P P
Sbjct: 75 VPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQ 134
Query: 636 XXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRP-PPXXXXPGXP 806
P P P P PP P PP + P P +P P P P
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPP--IPSKAPP--IPSSLPPPAQPAAPVKSPPSAP 188
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Frame = +3
Query: 606 PPXPXXPX-PPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPPXXXXTXXPXPXRPPP 782
PP P PP P+P P P PP PP P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 783 -XXXXPGXPP 809
P PP
Sbjct: 190 LPSAVPPMPP 199
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = -3
Query: 808 GGXPGXXXXGGGRXGXGXXVXXXXGGXXXGXRGG-GXXXXXGXGPXXXXGGXG 653
G G GGR G G GG G RGG G G GG G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,899
Number of Sequences: 5004
Number of extensions: 15574
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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