Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C23
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 54 2e-08
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 54 4e-08
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 52 1e-07
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 51 3e-07
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 46 1e-05
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 44 4e-05
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 42 2e-04
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 31 0.17
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 30 0.39
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 29 1.2
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 6.4
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 6.4
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi... 26 8.5
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +3
Query: 462 AASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLG 641
AAS T++V + L +G PN +DE+ +P+H A G+ D+++IL+ G + N +D G
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70
Query: 642 NTPL 653
TPL
Sbjct: 71 ETPL 74
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 558 LAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVIELLDAGTDVS 722
+AA G DVV L G +PN D G TP+H A H ++ L++ G D++
Sbjct: 10 IAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDIN 64
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 53.6 bits (123), Expect = 4e-08
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 453 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 629
L +AA +V+ L KA D ++PLH AA G + VV+ L+ A N
Sbjct: 111 LHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTS 170
Query: 630 DTLGNTPLHLAACTNHITVVIELLDAGTD 716
D+ G TPLH A H V +EL+ AG D
Sbjct: 171 DSYGFTPLHFALAEGHPDVGVELVRAGAD 199
Score = 43.6 bits (98), Expect = 4e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Frame = +3
Query: 453 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 632
L AA+ ++V+ L+ A N SD + +PLH A G+ DV L+R GA+ KD
Sbjct: 145 LHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGADTLRKD 204
Query: 633 TLGNTPLHLAACTNHITVVIELLDA 707
+ +T L + C + I V E L+A
Sbjct: 205 SENHTALEV--CPDRI-VCNEFLEA 226
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 51.6 bits (118), Expect = 1e-07
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = +3
Query: 453 LRFAASTNNTELVERLLKAGADPNC-SDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 629
L +AA + + LL+ GAD N + + +P+H AA RG V V L++HGA+P K
Sbjct: 38 LHWAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLK 97
Query: 630 DTLGNTPLHLA--ACTNHITVVIELLDAGTDVSPEE 731
D G LHLA A + + V + LD D+ ++
Sbjct: 98 DKQGFNCLHLAVHAASPLLVVYLLHLDISVDLRDDQ 133
Score = 42.3 bits (95), Expect = 9e-05
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 453 LRFAASTNNTELVERLLKAGA-DPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNN- 626
L AAS + V+ L+ + D N +DE + LH AA + + + LL HGA+ N
Sbjct: 4 LFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAI 63
Query: 627 KDTLGNTPLHLAACTNHITVVIELLDAGTD 716
L P+H AA + V L+ G D
Sbjct: 64 GGDLQAAPIHWAAKRGSVKTVHYLVQHGAD 93
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 453 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP 620
L +A+ N + LL+ GAD +DE K +PLH + G + ++++L+ G P
Sbjct: 138 LMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEGGIP 193
Score = 34.3 bits (75), Expect = 0.024
Identities = 32/114 (28%), Positives = 50/114 (43%)
Frame = +3
Query: 378 CSTKARHCRLKHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLH 557
C H + GG + A+ H +AA + + V L++ GADP D+ + LH
Sbjct: 50 CKFLLEHGADVNAIGGDLQAAPIH---WAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLH 106
Query: 558 LAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVIELLDAGTDV 719
LA +V LL + + +D +TPL A+ + + LL G DV
Sbjct: 107 LAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADV 160
Score = 30.7 bits (66), Expect = 0.30
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = +3
Query: 453 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 632
L A + LV LL + D+ + +PL A+ G + LLR GA+ D
Sbjct: 105 LHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATD 164
Query: 633 TLGNTPLHLAACTNHITVVIELLDAG 710
TPLH + ++ + +L G
Sbjct: 165 EDKMTPLHWSIVGGNLKCMKLILKEG 190
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 50.8 bits (116), Expect = 3e-07
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 486 LVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGN-TPLHLA 662
+VE L+ AG +PN D + LH A + V++LL+ GANP+ +D L + TPL LA
Sbjct: 349 IVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLA 408
Query: 663 ACTNHITVVIELLDAGTDV 719
+ T +V L+ +G V
Sbjct: 409 SATGLSEIVSILVASGASV 427
Score = 48.0 bits (109), Expect = 2e-06
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 429 VCASRNHKLRFAASTNNTELVERLLKAGADPNCSD-EHKRSPLHLAACRGYVDVVRILLR 605
V AS N L A N E V+ LLK GA+P+ D + +PL LA+ G ++V IL+
Sbjct: 363 VDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILVA 422
Query: 606 HGANPNNKDTLGNTPLHLAACTNHITVVIEL 698
GA+ + D+ G T + A ++ + +L
Sbjct: 423 SGASVDEVDSSGWTAMEQAVVRGYLHLADKL 453
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 513 ADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVI 692
+D + +E RS LHL A G + L G + N +D LG TPLH A+ +H + +
Sbjct: 853 SDFSLVNESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICV 912
Query: 693 ELLDAG 710
LL G
Sbjct: 913 NLLSNG 918
Score = 34.3 bits (75), Expect = 0.024
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 498 LLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAA 665
L AG D N D +PLH A+ + D+ LL +GA P+ G P+ L++
Sbjct: 881 LCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPIDLSS 936
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 43.6 bits (98), Expect = 4e-05
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +3
Query: 453 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP--N 623
L +A + EL++ ++ K + + DE+ S LH+A+ G++ VV+ ++ + N
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVIN 65
Query: 624 NKDTLGNTPLHLAACTNHITVVIELLDAGTD 716
++ GNT +H AA H + LL+AG D
Sbjct: 66 AQNESGNTAMHWAALNGHAEICKLLLEAGGD 96
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 438 SRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGAN 617
S N + +AA + E+ + LL+AG DP+ + +++SP++ A R V+ + L
Sbjct: 70 SGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDLFLDFEIA 129
Query: 618 PNNKDTLGN 644
+++ G+
Sbjct: 130 KGSEENTGD 138
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 447 HKLRFAASTNNTELVERLLKA-GADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 608
H L + N ++V+ +L D N D++K +PLHLAA G D+V LL H
Sbjct: 57 HALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 552 LHLAACRGYVDVVRILLRHGANPNNKDTLGNTP 650
LH+A ++V+ LL +GA+P +D G P
Sbjct: 193 LHVATKAKDAELVKWLLDNGADPYRRDKFGKLP 225
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 567 CRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVIELL 701
C V IL + N D NTPLHLAA +V LL
Sbjct: 65 CANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALL 109
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 537 HKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLA 662
H +PLH A + +V LLR+GA+P + G TP ++
Sbjct: 432 HTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEIS 473
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 453 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 608
L +A + N +LV +LL+ GADP + + ++P ++ V ++ RH
Sbjct: 437 LHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVKDEFLIARH 488
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 531 DEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPL 653
D+ + LH A G+++++++LLR A+ + L TPL
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 387 KARHCRL-KHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPN 524
+A +C L K T A + F+A N T+L+E +L ADPN
Sbjct: 159 RAGNCSLAKKEMEYTTSAIATNFSNFSALHNRTKLIETILNLEADPN 205
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 459 TATCDSWMRKLFHRIYA*DGSVLLL 385
+ATC +W R L A DG+V++L
Sbjct: 416 SATCPTWRRSLSSYSVAIDGTVIML 440
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 546 SPLHLAACRGYVDVVRILL-RHGANPNNKDTLGNTPL 653
S L LA R Y++ VR+L+ RH +N+++L N P+
Sbjct: 166 SRLFLALARAYLEKVRVLVWRH----DNEESLANIPV 198
>SPBC21H7.07c |his5||imidazoleglycerol phosphate
dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 258 FDHSKCVLEFNLPAIPITQSGQPMPVEFLDEPHDHVGKIKC 380
F H+ C L+ L + SG+P V L + VG++ C
Sbjct: 114 FGHAYCPLDEALSRSVVDLSGRPYAVIDLGLKREKVGELSC 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,453
Number of Sequences: 5004
Number of extensions: 59717
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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