Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C22
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    30   0.48 
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   4.4  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    27   4.4  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 471 STYETVKH-YSIVEFD*FIVSSIAFDNKDISDNYLSKLSSNKL 346
           STY+ +K+ + + +   F  S+  F N + SDN +S L S +L
Sbjct: 513 STYKVLKNDFQVFDLLNFFHSTFLFQNYEFSDNVISLLKSRRL 555


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 257 TIHSHTYNNTIKNEGTRSTLKATTISKHSKTLC*MHSRKWHDSVKM 120
           TI S  + N +KNEG +   +  T+   S TL    S   +DS+K+
Sbjct: 52  TIRS-CFQNAVKNEGLKGLYRGLTLPLISATLSRSVSFTVYDSLKL 96


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 450 VLLFHRYLCITLINLVIHGLIYFLNIFTS 536
           V L+H  L +T+ N   HGLI   N+ TS
Sbjct: 214 VPLYHEALNLTMANPSCHGLILMNNLATS 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,712
Number of Sequences: 5004
Number of extensions: 35292
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)