Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C20
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0790 + 25253363-25254136,25259037-25259897                       31   0.94 
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342...    29   3.8  
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    28   8.8  
09_02_0519 - 10150954-10152006                                         28   8.8  
08_01_0231 + 1851689-1851733,1851854-1852139,1852777-1853444           28   8.8  

>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +2

Query: 389 PSTPRTKDPYYLECLSELKAEMSCILEPLKLDEAVKAIPGSTSPGFPFIRT---HPGKKK 559
           P     ++PY L   S L AE++  +EP+ LD  V  + G+T+ G  ++         + 
Sbjct: 424 PEGTTCREPYLLR-FSPLFAELADDMEPVALDAQVTTLYGTTASGHKWLDPVVFFANPQP 482

Query: 560 EYIINNYLPKFNNYWTRVGNK 622
            Y + ++L      WTR G +
Sbjct: 483 AYRV-DFLGAVPREWTRAGGR 502


>12_02_0356 +
           17915029-17916236,17932970-17933283,17933936-17934244,
           17934613-17935439
          Length = 885

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 443 KAEMSCILEPLKLDEAVKAIPGSTS-PGFPFIRTHPGKKKEYIINNYLPKFNNYWTRVGN 619
           + E+S + +P++L    K    S    G+ +I  H G+ K ++  +   K   +   + +
Sbjct: 474 EVELSVLTKPVELKIVAKEFENSLKYSGYKYI--HQGEGKIHLQEHIAKKILQFPDAMND 531

Query: 620 KQKVSPLPDCAAFARSHISKV 682
           K+K+        +AR+HI+ +
Sbjct: 532 KKKLQQFLGLVNYARNHINNL 552


>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 464 LEPLKLDEAVKAIPGSTSPGFPFIRTHPGKKKEYIINNY 580
           L  L L E +  +P   +   P   THP KKK + ++++
Sbjct: 165 LSTLSLTELIDLVPHLVARSLPSPDTHPDKKKLFSVHHF 203


>09_02_0519 - 10150954-10152006
          Length = 350

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 741 ASSTIASTG*AQTGRTLLVPTLLIWLRAKAAQSGKGETFCL 619
           +++T+ S G    GR L    +L+W  A  A +    TFCL
Sbjct: 65  STTTVWSKGIRSVGRVLHTQPVLLWDNATGAAASFTMTFCL 105


>08_01_0231 + 1851689-1851733,1851854-1852139,1852777-1853444
          Length = 332

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 398 PRTKDPYYLECLSELKAEMSCILE--PLKLDEAVKAIPGSTSPGFPFIRTHPGK 553
           P+  D +YL+ L +L    + +++  P +L+E +KA   STS G    +   GK
Sbjct: 16  PKPSDDFYLD-LGDLPKSYANLMKDIPRRLEEIIKAEAPSTSKGKKLFKKISGK 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,662,862
Number of Sequences: 37544
Number of extensions: 372327
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)