Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C19
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 224 8e-59
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 1.9
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 1.9
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 30 2.5
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 30 2.5
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 30 2.5
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 30 2.5
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 224 bits (547), Expect = 8e-59
Identities = 98/140 (70%), Positives = 125/140 (89%)
Frame = +2
Query: 104 IQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 283
+Q+VQ FGRK+TATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 284 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 463
DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I YD+SLLVADPRR
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124
Query: 464 CEPKKFGGPGARARYQKSYR 523
E KKFGGPGARARYQKSYR
Sbjct: 125 RESKKFGGPGARARYQKSYR 144
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 380 YVDEASKKEIKDILVQYDRSLLVADPRRCE 469
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 319 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 140
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 139 G 137
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 319 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 140
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 139 G 137
G
Sbjct: 208 G 208
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 29.9 bits (64), Expect = 2.5
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 107 QAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 286
+AV+ +Q V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 287 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 427
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 29.9 bits (64), Expect = 2.5
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 107 QAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 286
+AV+ +Q V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 287 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 427
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 29.9 bits (64), Expect = 2.5
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 107 QAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 286
+AV+ +Q V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 287 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 427
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 29.9 bits (64), Expect = 2.5
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 107 QAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 286
+AV+ +Q V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 287 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 427
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,548
Number of Sequences: 27780
Number of extensions: 318413
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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