Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C17
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   5.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   5.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   5.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    22   7.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 593  PXXKTPPPPGXXXXXFGXPXXFPPPLXXXPXP 688
            P    PPPP       G P   PPPL     P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect(2) = 4.8
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
 Frame = -3

Query: 707 PPPPPPXAXXXG--XMGGGT--XXXPQKXXPXXXGXGGFF---XXXKXXPPPP 570
           PPPPPP     G   +G G+     P    P      G        +  PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 21.8 bits (44), Expect(2) = 4.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 710 KPPPPPP 690
           +PPPPPP
Sbjct: 310 RPPPPPP 316


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 5.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 628 PXPXGXGGFXXRXXXPPPPP 569
           P P    GF      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 21.4 bits (43), Expect(2) = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 709 NPXPPPRXPG 680
           NP PPP  PG
Sbjct: 8   NPPPPPPPPG 17


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 5.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 707 PPPPPPXAXXXG 672
           PPPPPP A   G
Sbjct: 777 PPPPPPPAVSAG 788



 Score = 21.0 bits (42), Expect(2) = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 710 KPPPPPPXA 684
           K PPPPP A
Sbjct: 730 KSPPPPPPA 738


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect(2) = 5.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 737  NGXTPXXXXKPPPPPP 690
            N   P     PPPPPP
Sbjct: 1087 NVSKPSAVPPPPPPPP 1102



 Score = 22.2 bits (45), Expect(2) = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 707  PPPPPPXA 684
            PPPPPP A
Sbjct: 1096 PPPPPPPA 1103


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.2 bits (45), Expect(2) = 7.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 707 PPPPPPXA 684
           PPPPPP A
Sbjct: 191 PPPPPPPA 198



 Score = 21.8 bits (44), Expect(2) = 7.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 725 PXXXXKPPPPPP 690
           P     PPPPPP
Sbjct: 184 PSDYNPPPPPPP 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,726
Number of Sequences: 5004
Number of extensions: 17642
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)