Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C17
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.64
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.64
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.64
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.64
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.64
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical pr... 30 2.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 3.4
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 3.4
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 6.0
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 29 6.0
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 6.0
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 6.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.0
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 690 GGXGXXXNGGGNXXGXPKXKXXXPGGGGVFXXGKXXPPPP 571
GG G GGG G GGGG PPPP
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +2
Query: 572 GGGGXXXPXXKTPPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKT 751
GGGG P PPPP PPP P P G G G S +
Sbjct: 291 GGGGYSAPAAAPPPPP-------------PPPPPPAPAPVSSGGGYSEQSSGGGGGSSYS 337
Query: 752 GG 757
GG
Sbjct: 338 GG 339
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGG 657
PPPPPP A GGG
Sbjct: 306 PPPPPPPAPAPVSSGGG 322
Score = 23.4 bits (48), Expect(2) = 1.1
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -3
Query: 767 SXGXPRFFGXNGXTPXXXXKPPPPPP 690
S G G G + PPPPPP
Sbjct: 283 SGGYAGSSGGGGYSAPAAAPPPPPPP 308
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 690 GGXGXXXNGGGNXXGXPKXKXXXPGGGGVFXXGKXXPPPP 571
GG G GGG G GGGG PPPP
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +2
Query: 572 GGGGXXXPXXKTPPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKT 751
GGGG P PPPP PPP P P G G G S +
Sbjct: 291 GGGGYSAPAAAPPPPP-------------PPPPPPAPAPVSSGGGYSEQSSGGGGGSSYS 337
Query: 752 GG 757
GG
Sbjct: 338 GG 339
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGG 657
PPPPPP A GGG
Sbjct: 306 PPPPPPPAPAPVSSGGG 322
Score = 23.4 bits (48), Expect(2) = 1.1
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -3
Query: 767 SXGXPRFFGXNGXTPXXXXKPPPPPP 690
S G G G + PPPPPP
Sbjct: 283 SGGYAGSSGGGGYSAPAAAPPPPPPP 308
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/96 (30%), Positives = 29/96 (30%)
Frame = +2
Query: 572 GGGGXXXPXXKTPPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKT 751
GG P PPPP G P PPP P P GG G S
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPP-PPPPGGLP-PITGGPPPPPPPGGLPPIS--- 755
Query: 752 GGXPXKKXXXXXAXKXPGTXKXAPXXXGFSKXPPPP 859
GG P P P GF PPPP
Sbjct: 756 GGPPPPPPPPGGCPPPP----PPPPPGGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Frame = -1
Query: 742 GXTXXPPXXXXNPXPPPRXP---GXXXXXXXXXXXXPKXXXPXPXGXGGFXXRXXXPPPP 572
G + PP P PP P G P P GG PPPP
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 571 PXP 563
P P
Sbjct: 762 PPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/96 (30%), Positives = 29/96 (30%)
Frame = +2
Query: 572 GGGGXXXPXXKTPPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKT 751
GG P PPPP G P PPP P P GG G S
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPP-PPPPGGLP-PITGGPPPPPPPGGLPPIS--- 755
Query: 752 GGXPXKKXXXXXAXKXPGTXKXAPXXXGFSKXPPPP 859
GG P P P GF PPPP
Sbjct: 756 GGPPPPPPPPGGCPPPP----PPPPPGGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Frame = -1
Query: 742 GXTXXPPXXXXNPXPPPRXP---GXXXXXXXXXXXXPKXXXPXPXGXGGFXXRXXXPPPP 572
G + PP P PP P G P P GG PPPP
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 571 PXP 563
P P
Sbjct: 762 PPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/96 (30%), Positives = 29/96 (30%)
Frame = +2
Query: 572 GGGGXXXPXXKTPPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKT 751
GG P PPPP G P PPP P P GG G S
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPP-PPPPGGLP-PITGGPPPPPPPGGLPPIS--- 338
Query: 752 GGXPXKKXXXXXAXKXPGTXKXAPXXXGFSKXPPPP 859
GG P P P GF PPPP
Sbjct: 339 GGPPPPPPPPGGCPPPP----PPPPPGGFKGGPPPP 370
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Frame = -1
Query: 742 GXTXXPPXXXXNPXPPPRXP---GXXXXXXXXXXXXPKXXXPXPXGXGGFXXRXXXPPPP 572
G + PP P PP P G P P GG PPPP
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 571 PXP 563
P P
Sbjct: 345 PPP 347
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Frame = +2
Query: 608 PPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKTGGXPXKKXXXXX 787
PPPPG G P PPP PPG G G P +
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Query: 788 AXKXPGTXKXAP-XXXGFSKXPPPP 859
P P G PPPP
Sbjct: 361 GMYPPPPPSRPPAPPSGHGMIPPPP 385
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPPG 567
PPPPPP G G P P G G PPPPG
Sbjct: 298 PPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGM--GGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Frame = +2
Query: 608 PPPPGXXXXXFGXPXXFPPPLXXXPXPPGGGXGVXXXXXGXXRXSQKTGGXPXKKXXXXX 787
PPPPG G P PPP PPG G G P +
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Query: 788 AXKXPGTXKXAP-XXXGFSKXPPPP 859
P P G PPPP
Sbjct: 371 GMYPPPPPSRPPAPPSGHGMIPPPP 395
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPPG 567
PPPPPP G G P P G G PPPPG
Sbjct: 308 PPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGM--GGMPPPPPPG 350
>Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical
protein F46B3.5 protein.
Length = 946
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 655 VPPPIXPXXXAXGGGGGG 708
VPPP+ P GGGGGG
Sbjct: 722 VPPPVAPAVAFAGGGGGG 739
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -3
Query: 734 GXTPXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPP 576
G P PPPPPP G G P P G GG PP
Sbjct: 621 GMAPISSAAPPPPPP-PPPMGLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPP 672
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
PPPPPP G + P P G PPPP
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPP 655
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -1
Query: 706 PXPPPRXPGXXXXXXXXXXXXPKXXXPXPXGXGGFXXRXXXPPPPPXP 563
P PPP P P P P G PPPPP P
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 657
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
PPPPPP + + P P G PPPP
Sbjct: 612 PPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 657
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -3
Query: 734 GXTPXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPP 576
G P PPPPPP G G P P G GG PP
Sbjct: 447 GMAPISSAAPPPPPP-PPPMGLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPP 498
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
PPPPPP G + P P G PPPP
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPP 481
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -1
Query: 706 PXPPPRXPGXXXXXXXXXXXXPKXXXPXPXGXGGFXXRXXXPPPPPXP 563
P PPP P P P P G PPPPP P
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 483
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = -3
Query: 707 PPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
PPPPPP + + P P G PPPP
Sbjct: 438 PPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 483
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 564 GSGGGGGXFXRXKKPPXPXGXG 629
GSGG GG R PP P G G
Sbjct: 200 GSGGSGGGSGRFPPPPPPYGGG 221
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = +3
Query: 567 SGGGGGXFXRXKKPPXPXGXGXXFL--XXXXXXXXXXXXXPGXRGGGXGFXXXXGG 728
SGGGGG PP P G G L P GGG G GG
Sbjct: 21 SGGGGGCGCAPPPPPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGGCGGPAPCGG 76
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -2
Query: 705 PXPPPGGXGXXXNGGGNXXGXPKXKXXXPGGGGVFXXGKXXPPPP 571
P PPG G G N P PGG G G+ P P
Sbjct: 152 PRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGEDAAPGP 196
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 6.0
Identities = 28/94 (29%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Frame = +2
Query: 614 PPGXXXXXFGXPXXFPP--PLXXXPXPPGGGXGVXXXXXGXXRXSQKTGGXPXKKXXXXX 787
PPG G P FPP P P PPG G R Q P K
Sbjct: 124 PPGHHFQ--GPPQHFPPGPPRPHFPGPPGPHRP-PEHYPGPPRP-QAPAAPPPKSLFPSA 179
Query: 788 AXKXP--GTXKXAPXXXGFSKXPPPPWXAFQKFP 883
P AP G + PPP FQ+ P
Sbjct: 180 QKPKPLFAAASSAPSFFGAPQRPPPQLHFFQESP 213
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 690 GGXGXXXNGGGNXXGXPKXKXXXPGGGGVFXXGKXXPPPP 571
GG G GGG G G GG + G PPPP
Sbjct: 32 GGGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPP 71
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = -3
Query: 725 PXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPPGXG 561
P PPPPPP G P P G PPPP G
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = -3
Query: 734 GXTPXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
G P PPPPP A G+ P P GG + PPP
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = -1
Query: 727 PPXXXXNPXPPPRXPGXXXXXXXXXXXXPKXXXPXPXGXGGFXX--RXXXPPPPPXP 563
PP PPP G P P P GG R PPPPP P
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = -3
Query: 725 PXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPPGXG 561
P PPPPPP G P P G PPPP G
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = -3
Query: 734 GXTPXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
G P PPPPP A G+ P P GG + PPP
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = -1
Query: 727 PPXXXXNPXPPPRXPGXXXXXXXXXXXXPKXXXPXPXGXGGFXX--RXXXPPPPPXP 563
PP PPP G P P P GG R PPPPP P
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = -3
Query: 725 PXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPPGXG 561
P PPPPPP G P P G PPPP G
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = -3
Query: 734 GXTPXXXXKPPPPPPXAXXXGXMGGGTXXXPQKXXPXXXGXGGFFXXXKXXPPPP 570
G P PPPPP A G+ P P GG + PPP
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = -1
Query: 727 PPXXXXNPXPPPRXPGXXXXXXXXXXXXPKXXXPXPXGXGGFXX--RXXXPPPPPXP 563
PP PPP G P P P GG R PPPPP P
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,049
Number of Sequences: 27780
Number of extensions: 236832
Number of successful extensions: 2551
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -