Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C15
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 84 2e-17
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 77 3e-15
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 28 1.5
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 27 2.7
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 3.6
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 27 4.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.2
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 6.2
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 6.2
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 8.2
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 8.2
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 8.2
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 84.2 bits (199), Expect = 2e-17
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Frame = +3
Query: 297 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYY-ENSYEPKVLITYSDNPH 473
+ IP T+E+ R DET++ + + EE Q +++ DE S Y+ E PK+L+T S
Sbjct: 49 ENIPATIESKRVYDETII---EDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRAS 105
Query: 474 SKTRIFGRELTRIIPNSLSRYRQRS-SVKRIVQSAIREDVTDVIIINENQRQPNGFLLIH 650
K F EL PN+ R R V I ++A + TD++++NE++++ N L+H
Sbjct: 106 RKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVH 165
Query: 651 LPAGPTAHFRLSSCKITPEL 710
LP GP+ +F LS+ + E+
Sbjct: 166 LPNGPSFYFTLSNLQTAKEI 185
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 725 RXSIHRPEVVLNNFSTRLGLTVGRMLGAL-XTTNXIPRPESCHLSXPRDYXFFR 883
R + H PE+++NNFSTRLG+TV R +L T I + + RD+ FFR
Sbjct: 190 RSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFR 243
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 77.0 bits (181), Expect = 3e-15
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Frame = +3
Query: 351 VNADTEEQEEAQKDMELDE-------LSTYYENSY------EPKVLITYSDNPHSKTRIF 491
+N D +E + QKD + DE T ++ Y EPKVL+T S P S+ F
Sbjct: 42 LNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQF 101
Query: 492 GRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTA 671
+E+ +IPNS R V +V++A D+TD++I++E++ P+G ++ HLP GPT
Sbjct: 102 AKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTL 161
Query: 672 HFRL 683
F L
Sbjct: 162 SFSL 165
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 495 RELTRII-PNSLSRYRQRSS--VKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGP 665
R+L ++ P++ R ++R + +K + A VT +++++ N +I P GP
Sbjct: 47 RDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNAN-LRIIRAPRGP 105
Query: 666 TAHFRL 683
+ HFR+
Sbjct: 106 SLHFRI 111
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 423 ENSYEPKVLITYSDNPHSKTRIFGREL-TRIIPNSLSRYRQRSS 551
+ +YE + + D S RIF RE+ TRI L +Y RSS
Sbjct: 443 QGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSS 486
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +3
Query: 288 DVPKKIPHTLETLRE-KDETMLVNA--DTEEQEEAQKDMELDELSTYYENSYEPKVLITY 458
D+ K + + TLR +DE L ++ +A + + T Y+ + LIT
Sbjct: 464 DLQKSLIEHVRTLRRIEDEITLTKMWISIAKESDAMSGHNIKSVETRLAKLYDQRSLITA 523
Query: 459 SDNPHSKTRIFGRELTRII 515
NP + F ++ I+
Sbjct: 524 KVNPEEICKTFQNSISHIV 542
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 477 KTRIFGRELTRIIPN----SLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLL 644
+ R REL R N SL+R R+R + R + + ++ + I+ + ++Q +L
Sbjct: 255 EAREAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEEREIVQKKKKQYRAWLA 314
Query: 645 IHLPAGPTA 671
+LP P++
Sbjct: 315 SNLPPEPSS 323
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 220 YILCXLK*CFLNSLKNKLVSWYTYQEIRL-HKFSELLKN 107
YILC + C+L S+ K + + + + L +K E+LK+
Sbjct: 467 YILCFSENCWLYSVLQKTIDHWVNENVELFYKKFEILKS 505
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +1
Query: 100 YCYFLKVPRIYVI*FLDKCTNLPIYSLMNLKNTTLXCIKYKSTKWLVERIKKNAS 264
+ Y L+ PR+++ +D + ++ ++ KN+ + WLV+R + A+
Sbjct: 220 WAYLLEWPRVFLNASVDSFSKQEVFEPLDGKNSNFEPDNIRHIDWLVKRSIERAN 274
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 400 LMNFQHTMRIRMSQKC*SHTLIIHTVKLEYSEEN*LG--LYLILY 528
L+N +H M ++M+ C S TL+ EY N G LY +L+
Sbjct: 2059 LLNLEHRMMLQMAPDCDSLTLLQKLEVFEYVMANTDGYDLYHVLW 2103
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 784 QTQSCTEVVEDDLWSVYGXSXWSFPS 707
+T SC ++ E D W V S W F S
Sbjct: 405 ETHSCVDIFERDTWPVM-LSKWVFTS 429
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 477 KTRIFGRELTRIIPNSLSRYRQRSSVKRIVQ--SAIREDVTDVIIINENQRQPNGFLLIH 650
K ++ G+EL +++P+S+ SSV ++Q ++ + V+ N + PN L +
Sbjct: 325 KLKLSGKELPKVLPSSM-----LSSVAPLMQKSKSVPTSIPSVVPANISSPNPNPTLAPN 379
Query: 651 LPAGPT 668
P GP+
Sbjct: 380 -PTGPS 384
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 291 VPKKIPHTLETLR-EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 467
+P ++P L+ + + E+ +A E E D ++ LS YY +E K ++
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGKDSKKFTLV 563
Query: 468 PHSKTRIFGR 497
H +FGR
Sbjct: 564 KHFMNSLFGR 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,290
Number of Sequences: 5004
Number of extensions: 67913
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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