Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C15
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0270 - 2001569-2001589,2001852-2001980,2002966-2003055,200... 91 1e-18
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316... 77 1e-14
11_06_0289 - 21969248-21973516 33 0.30
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 32 0.70
11_06_0185 + 21018045-21022307 31 1.2
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 29 3.8
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 5.0
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704... 29 6.6
11_06_0671 + 26099292-26099491,26099589-26099622,26104787-261048... 28 8.7
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 28 8.7
>06_01_0270 -
2001569-2001589,2001852-2001980,2002966-2003055,
2003361-2003466,2003985-2004064,2005895-2005977,
2006057-2006126,2006208-2006291,2006445-2006540,
2007555-2007635,2007844-2007999
Length = 331
Score = 91.1 bits (216), Expect = 1e-18
Identities = 50/142 (35%), Positives = 79/142 (55%)
Frame = +3
Query: 297 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHS 476
K +P T+E RE DET+ + +E + DE + + PKVLIT
Sbjct: 56 KLVPRTIENTREPDETVC----RPDDQELFAGNDADEFNAVLKQQTTPKVLITTCRFNSG 111
Query: 477 KTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLP 656
+ F EL ++IPNS R +K+IV+ A D T +++++ N+R+P+ L+I+LP
Sbjct: 112 RGPAFIEELMQVIPNSCYVKRGTYELKKIVEYANNRDFTSLVVVHTNRREPDALLIINLP 171
Query: 657 AGPTAHFRLSSCKITPELGKDH 722
AGPTAHF+LS + ++ K+H
Sbjct: 172 AGPTAHFKLSKLILRKDI-KNH 192
Score = 37.1 bits (82), Expect = 0.019
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 737 HRPEVVLNNFSTRLGLTVGRML 802
H+PE+VLNNF+TRLG VGR +
Sbjct: 198 HKPELVLNNFTTRLGHRVGRYI 219
>08_01_0360 -
3160723-3160821,3160911-3160995,3161099-3161205,
3163066-3163155,3163265-3163408,3163572-3163622,
3163735-3163844,3163928-3164123
Length = 293
Score = 77.4 bits (182), Expect = 1e-14
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Frame = +3
Query: 276 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSY-EPKVLI 452
+E D K IP LR ++ + D E+++ A +D+ Y + EPK+L+
Sbjct: 33 REALDEGKPIP---TELRNEELALRREIDLEDKDSAVPRSLIDD--EYAGAALREPKILL 87
Query: 453 TYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 632
T S NP + F +EL + PNS R + IV+S D+TD+++++E++ QP+
Sbjct: 88 TTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHDITDLVLVHEHRGQPD 147
Query: 633 GFLLIHLPAGPTAHFRL 683
G ++ HLP GPTA+F L
Sbjct: 148 GLIVCHLPFGPTAYFGL 164
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 330 EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKT----RIFGR 497
+ DE + D EE+EE D + +E +E+ YE + ++ N SK ++
Sbjct: 517 DNDEDSNDDDDDEEEEEEDDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAE 576
Query: 498 ELTRIIPNSLSRYRQRSSVKRIVQSAIRE 584
+ T+ +L R + + Q +RE
Sbjct: 577 QATKTAATTLDEERIKQMINEAKQDVLRE 605
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 PKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDE 407
P + P LE+L E D T ++TE++EEA LD+
Sbjct: 464 PDEQPLPLESLHETDPTAQEASETEQEEEATASQRLDQ 501
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 360 DTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKT----RIFGRELTRIIPNSL 527
D +E+EE + D + +E +E+ YE + ++ N SK ++ + T+ +L
Sbjct: 525 DDDEEEEEEDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAEQATKTAATTL 584
Query: 528 SRYRQRSSVKRIVQSAIRE 584
R + + Q +RE
Sbjct: 585 DEERIKQMINEAKQDVLRE 603
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 674 VRSGTCRQMDEKKTIRLPLVLINYNHICDVFSDC*LYYTF 555
V G CR MD + L + ++N+N + DV++ L Y F
Sbjct: 429 VLHGCCRHMDIEVAYGLWIDMVNHNFVPDVYNYTSLIYAF 468
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 537 RQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTAHFRLSSCKI 698
R+ + R+V + V + +I + + +GFLL+ L GPT F L ++
Sbjct: 814 RELDPILRMVSGILHNGVRNRVITSLMKGSFDGFLLVLLAGGPTRAFTLQDSQM 867
>11_01_0800 -
7047425-7048253,7048340-7048927,7049050-7049268,
7049398-7049518,7050593-7050983
Length = 715
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1
Query: 787 RGSHARCALXYEPXSEAGELSP 852
RG ARCA+ P SEAGELSP
Sbjct: 69 RGFLARCAVAV-PASEAGELSP 89
>11_06_0671 +
26099292-26099491,26099589-26099622,26104787-26104813,
26105557-26105642,26105735-26105783,26105969-26106018,
26106692-26107185,26107379-26107539,26107808-26108017,
26108100-26108292,26108367-26108444,26108555-26108649,
26109158-26109280
Length = 599
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 169 IYSLMNL--KNTTLXCIKYKSTKWLVERIKK-NAS*KRNKREMMYLRKSLTRWKLFVKKM 339
+Y L + K T +K+ + + +K N + K+ + E L K+ WK VK
Sbjct: 327 VYRLKGISKKGTRFDWLKHNGINTVEDMLKALNKNEKKIRTECFKLEKNSKDWKETVKHA 386
Query: 340 RRCSL 354
R+C L
Sbjct: 387 RKCDL 391
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 324 EFPTCEGFS*VHHLPLVSF---LTCVFFYPFHEPFCTFIFYA 208
E P+ F VHH L SF L+CV PF+ F +F++
Sbjct: 55 ETPSIVRFQKVHHKLLDSFFSVLSCVVSVPFYTGFLPLLFWS 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,044,739
Number of Sequences: 37544
Number of extensions: 391330
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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