Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C15
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-7|CAA90124.4| 384|Caenorhabditis elegans Hypothetical pr... 106 2e-23
Z83246-2|CAB05841.1| 292|Caenorhabditis elegans Hypothetical pr... 77 2e-14
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 3.3
U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical pr... 28 7.7
U88311-4|AAB42344.1| 537|Caenorhabditis elegans Udp-glucuronosy... 28 7.7
U88168-1|AAC24403.2| 376|Caenorhabditis elegans Hypothetical pr... 28 7.7
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 28 7.7
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 28 7.7
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 28 7.7
>Z49910-7|CAA90124.4| 384|Caenorhabditis elegans Hypothetical
protein F44G4.1 protein.
Length = 384
Score = 106 bits (255), Expect = 2e-23
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = +3
Query: 282 GDDVPKK-IPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITY 458
G+ P+K +P T+E++RE D TM+ EE +E + D DE + Y+ PKV+IT
Sbjct: 128 GESAPQKEVPKTIESMREYDATMV----NEEDDEVEHDEANDEFAPYFNRETSPKVMITM 183
Query: 459 SDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGF 638
+ T F EL + IPNS R+ +K I++ A + TD+++++E++++PNG
Sbjct: 184 TPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGI 243
Query: 639 LLIHLPAGPTAHFRLSSCKITPELGK 716
+ HLP GPTA+F+++S T +L K
Sbjct: 244 IFCHLPEGPTAYFKINSLTFTQDLKK 269
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 737 HRPEVVLNNFSTRLGLTVGRMLGALXTTN-XIPRPESCHLSXPRDYXFFRH 886
H PEV+LNNF+TRLG + RML L + RDY FFRH
Sbjct: 276 HFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRH 326
>Z83246-2|CAB05841.1| 292|Caenorhabditis elegans Hypothetical
protein ZK795.3 protein.
Length = 292
Score = 77.0 bits (181), Expect = 2e-14
Identities = 34/90 (37%), Positives = 58/90 (64%)
Frame = +3
Query: 420 YENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDV 599
+ + +PK++IT S +P S+ ++F +E+ I PN+ R VK++VQ++ +D TD+
Sbjct: 72 WAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDL 131
Query: 600 IIINENQRQPNGFLLIHLPAGPTAHFRLSS 689
II E + P+G L+ HLP GPTA F +++
Sbjct: 132 IIFTETRGNPDGMLVCHLPFGPTAFFSMAN 161
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
H03E18.1 protein.
Length = 1147
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +3
Query: 312 TLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYE--PKVLITYSDNPHSKTR 485
T+ETL + N D++E+E+ KD L E+ E K+ IT S P S +
Sbjct: 879 TIETLLKAKIPESSNVDSQEKEDINKDPRLVEMKKVEAQVLEKLAKMEITESTAPDSTSS 938
Query: 486 IFGREL-TRIIPNSLSRYRQRSSVKRIVQSA 575
+ T + +++ ++S+K + A
Sbjct: 939 TIPENIETESTSSEITKQTAKTSMKSSIPEA 969
>U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical
protein ZK328.4 protein.
Length = 532
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 297 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHS 476
+KIP + + + D+ + + EE EE ++D++ +E Y E+S E + I+YSD
Sbjct: 199 RKIPVKKDFVVD-DDYISEESSEEESEEEEEDVDDEE---YRESSPEVEAKISYSDRKQK 254
Query: 477 K 479
K
Sbjct: 255 K 255
>Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 288 DVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 467
+ P I E+ E+ A E ++ E ++ S Y S E +V I +N
Sbjct: 717 EAPSTIGSLKRKATEESESSSTPAAKRESIRNKQKKEKEQYSAYPYVSEEEEVAIF--EN 774
Query: 468 PHSKTRIFGRELTRII 515
+ +++GREL R++
Sbjct: 775 SNGNPQVYGRELGRLL 790
>Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 288 DVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 467
+ P I E+ E+ A E ++ E ++ S Y S E +V I +N
Sbjct: 717 EAPSTIGSLKRKATEESESSSTPAAKRESIRNKQKKEKEQYSAYPYVSEEEEVAIF--EN 774
Query: 468 PHSKTRIFGRELTRII 515
+ +++GREL R++
Sbjct: 775 SNGNPQVYGRELGRLL 790
>U88311-4|AAB42344.1| 537|Caenorhabditis elegans
Udp-glucuronosyltransferase protein28 protein.
Length = 537
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 289 SSPSCFFSNLRFFLSFPRAIL 227
SS S FF N FL FPRA+L
Sbjct: 248 SSASIFFVNANPFLDFPRAVL 268
>U88168-1|AAC24403.2| 376|Caenorhabditis elegans Hypothetical
protein K11H12.9 protein.
Length = 376
Score = 28.3 bits (60), Expect = 7.7
Identities = 32/125 (25%), Positives = 49/125 (39%)
Frame = +3
Query: 348 LVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSL 527
L + + +++ L LS Y N + + +P +KT G E++R +S
Sbjct: 11 LPGSSSPSSSSTTEELRLAALSPYSPNDDISSIPDSLEHSP-AKTSDDGSEISRANFSSP 69
Query: 528 SRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTAHFRLSSCKITPE 707
S RS K++ S + V + E P F I L AG + SC T
Sbjct: 70 SS-PSRSPSKKVSWSLFDQ----VSLSGEEFLLPRRFEAIELNAGTSTRSTSISCSATDL 124
Query: 708 LGKDH 722
L DH
Sbjct: 125 LESDH 129
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 336 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 485
+E + + EA + LS Y +S+ PK+L ++ PHS R
Sbjct: 919 EEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALR 968
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 336 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 485
+E + + EA + LS Y +S+ PK+L ++ PHS R
Sbjct: 899 EEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALR 948
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 336 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 485
+E + + EA + LS Y +S+ PK+L ++ PHS R
Sbjct: 899 EEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALR 948
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,160,587
Number of Sequences: 27780
Number of extensions: 379477
Number of successful extensions: 1235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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