Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C13
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.38
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 30 2.7
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 30 2.7
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 30 2.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.1
>U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical
protein F47B3.4 protein.
Length = 281
Score = 32.7 bits (71), Expect = 0.38
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP K PP APP
Sbjct: 52 PPPPPPPAPKVPEPPKAPP 70
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPPXXFXXXPXFFXXFFXGPXXPG 597
PP PPP PP PP + P + + G PG
Sbjct: 41 PPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYGPG 80
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPPXXFXXXP 639
PP PPPP PP PP F P
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGP 784
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP K PP PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPPXXFXXXP 639
PP PPPP PP PP F P
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGP 784
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP K PP PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPPXXFXXXP 639
PP PPPP PP PP F P
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGP 367
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP K PP PP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP + PP +PP
Sbjct: 138 PPPPPPPRVPRTPPPRSPP 156
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 713 PXPPPPXKKKXXPPXAPP 660
P PPPP K PP APP
Sbjct: 52 PPPPPPAPKVPEPPKAPP 69
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 713 PXPPPPXKKKXXPPXAPP 660
P PPPP K++ PP PP
Sbjct: 296 PIPPPPIKEESPPPPPPP 313
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 713 PXPPPPXKKKXXPPXAPP 660
P PPPP K++ PP PP
Sbjct: 296 PIPPPPIKEESPPPPPPP 313
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP PP PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPP 279
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP PP PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPP 289
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 716 PPXPPPPXKKKXXPPXAPP 660
PP PPPP PP PP
Sbjct: 576 PPPPPPPPPMLGGPPPPPP 594
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,953
Number of Sequences: 27780
Number of extensions: 104231
Number of successful extensions: 1402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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