Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C08
(912 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 71 4e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 42 0.017
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 40 0.067
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.36
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 1.4
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 35 3.3
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.8
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 70.9 bits (166), Expect = 4e-11
Identities = 46/83 (55%), Positives = 50/83 (60%)
Frame = +1
Query: 418 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVK 597
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE---I 77
Query: 598 RPRCWRFSIGSAPLTSITKIDAQ 666
RPR RFSIGSAPLTSI K DAQ
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQ 100
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 4e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -1
Query: 582 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 469
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 382 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 549
CI + A AR AV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 501 HSKAVIRLSTESGDNAGKNM 560
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 42.3 bits (95), Expect = 0.017
Identities = 22/31 (70%), Positives = 23/31 (74%)
Frame = +1
Query: 574 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQ 666
SK+ T R RFSIGSAPLTSITKIDAQ
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQ 32
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 40.3 bits (90), Expect = 0.067
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +1
Query: 592 VKRPRCWRFSIGSAPLTSITKIDAQ 666
V+ PR RFSIGSAPLTSITK DAQ
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQ 68
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.36
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -2
Query: 452 ERGSGRAPNTQTAXPRALADSLMQ 381
+R + APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.9 bits (79), Expect = 1.4
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 380 SALMNRPTXGXRRFAYW 430
+ALMNRPT G RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 34.7 bits (76), Expect = 3.3
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 184 DPXMIXYIDEXGQTTTXMQ 240
DP MI YIDE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 591 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 469
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,480,713
Number of Sequences: 1657284
Number of extensions: 6946865
Number of successful extensions: 15154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15151
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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