Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C06
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 214 1e-56
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 102 8e-23
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 96 5e-21
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 91 1e-19
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 87 2e-18
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 81 2e-16
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 80 5e-16
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 79 8e-16
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 33 0.054
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.6
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 3.6
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 4.7
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 4.7
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 26 6.2
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 26 6.2
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 8.2
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 214 bits (523), Expect = 1e-56
Identities = 107/187 (57%), Positives = 137/187 (73%)
Frame = +2
Query: 191 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 370
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 371 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGF 550
L EMQIQ+PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGF 121
Query: 551 DIARNKSLEVLESMKIPIEVARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPG 730
++A+N++L L+S K EV RE L++VA+TSL TK+ + + L A VDA+LTIR P
Sbjct: 122 NLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPD 181
Query: 731 KPVDLHM 751
+P+DLHM
Sbjct: 182 EPIDLHM 188
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/45 (64%), Positives = 42/45 (93%)
Frame = +3
Query: 753 VEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNV 887
VEIM+M++++A++T L++GL++DHGARHPDMPK+V+NAYIL NV
Sbjct: 189 VEIMKMQNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILILNV 233
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 102 bits (244), Expect = 8e-23
Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Frame = +2
Query: 248 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 427
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + + HP A ++
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSA 83
Query: 428 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 607
V+L G +L A+ + +G+HP +I E F A +++ ++ + IE
Sbjct: 84 AQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143
Query: 608 VA-RENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTP 727
++ RE+L+ A TSL +K+ +++L VDAVL + P
Sbjct: 144 LSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP 184
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 96.3 bits (229), Expect = 5e-21
Identities = 51/164 (31%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Frame = +2
Query: 236 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 415
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+++H A L+
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 416 RXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMK 595
+ V+L G LL+QA+ I +G+HP I +G++ A +++ L+++
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAIS 154
Query: 596 IPIEVARENLVDV---ARTSLKTKVHPSLADVLTDACVDAVLTI 718
++ + EN ++ A+TSL +KV D + VDAVL++
Sbjct: 155 DVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3
Query: 789 ETVLVKGLVMDHGARHPDMPKRVENA--YILTC 881
+T LVKG+V+D HP MP R+ENA ILTC
Sbjct: 223 DTKLVKGVVVDKDMSHPQMPHRIENAKIAILTC 255
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 91.5 bits (217), Expect = 1e-19
Identities = 44/161 (27%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +2
Query: 248 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 427
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + ++HP ++
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQ 85
Query: 428 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVL-ESMKIPI 604
V++ ELL++A+ + +HP I G+ +A ++++ + + + +
Sbjct: 86 QQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSV 145
Query: 605 E-VARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRT 724
+ + +E+L++VA+TS+ +K+ + +D + VDA+L+++T
Sbjct: 146 DSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 753 VEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYI 872
V I++ K++ E+VLVKG ++ M RV+NA I
Sbjct: 200 VNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAKI 239
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 87.4 bits (207), Expect = 2e-18
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +2
Query: 248 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 427
NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E+++ HP A +
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELAR 83
Query: 428 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 607
++L GE+L A + +HP ++ F A +L +++ + +P+
Sbjct: 84 TQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVN 143
Query: 608 V-ARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTI 718
V + + RT + TK+ +D++ + AV T+
Sbjct: 144 VDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTV 181
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 81.0 bits (191), Expect = 2e-16
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Frame = +2
Query: 239 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 418
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I HP A +
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVD 85
Query: 419 XXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI 598
V+ GELL++A F+ +G+ +I G+ A ++ ++ + I
Sbjct: 86 IARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAI 145
Query: 599 PIEVA-----RENLVDVARTSLKTKVHPSLADVLTDACVDAVLTI 718
++++ R+ L A T++ +K+ S + T VDAVLT+
Sbjct: 146 HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTL 190
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 79.8 bits (188), Expect = 5e-16
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Frame = +2
Query: 236 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 415
A+ N +A + + ++ +T+LGP G K++V+ +T D ++ E+++ HP A L+
Sbjct: 27 AVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVV 86
Query: 416 RXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM- 592
V+ GELL +A+ I GL P I +G+++A + ++EVLE +
Sbjct: 87 DATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEIC 146
Query: 593 --KIPIEVARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTI 718
KI + + L+ RT + +K + + D L+D A+LT+
Sbjct: 147 ADKIETVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTV 189
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 79.0 bits (186), Expect = 8e-16
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
Frame = +2
Query: 224 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQIQHPT 400
R A + A + D++K+ LGPKG K+L S + GDI +T DG +L + + +
Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAA 76
Query: 401 ASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEV 580
A ++ + ELL+QA+I ++ +HP++I +G+ IA +++
Sbjct: 77 AKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDA 136
Query: 581 LESMKI-----PIEVARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIR 721
L + I P + R +L ++ART+L +K+ + VDAVL ++
Sbjct: 137 LRASSIDNSSDPAKF-RSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLK 187
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 33.1 bits (72), Expect = 0.054
Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 6/175 (3%)
Frame = +2
Query: 281 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR----XXXXXXXXXX 448
+ LGPKG ++ G KITKDG + + ++ +L AR
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAG 117
Query: 449 XXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARENLV 628
+L + + ++ G +P + G +A + +E L++ K I + E +
Sbjct: 118 DGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTS-EEIS 176
Query: 629 DVARTSLK--TKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMG*NYGDETQDGY 787
VA S T + LA + + V+T++ G+ + + G + GY
Sbjct: 177 QVATISANGDTHIGELLAKAMERVGKEGVITVK-EGRTISDELEVTEGMKFDRGY 230
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 503 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 598
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 803 YKYSFSSRLVFHLHNF-NPCADQQVCLEFEW 714
Y Y+FSS LV LH PC + + +++ +
Sbjct: 591 YNYTFSSALVVLLHCVTEPCEEDDIAMQYAY 621
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 707 PHQRKHQLAHLQGLGGP*F*VKY 639
PHQR H A L GGP F + Y
Sbjct: 63 PHQRAHNAAALARSGGPGFSMNY 85
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 794 CTCKRSSNGSWCTSPRYAKACRKC 865
C +R SNG WCT K C
Sbjct: 973 CIIERDSNGRWCTKHLQRKTKEVC 996
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 183 ISFNTFSVSINHEETLSYKPISKMDHKIL 97
ISFN+FS S+N EE + P+ + ++
Sbjct: 203 ISFNSFSNSLNSEEDVCVSPMKPKEVSLM 231
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 831 RHPDMPKRVENAYIL 875
RHPD+PK+ +A+IL
Sbjct: 142 RHPDVPKKPSSAFIL 156
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Frame = +2
Query: 590 MKIPIEVARENLVDVARTSLKTKVHPSL--ADVLTDACVDAVLTIRTPGKPVDL-HMG*N 760
+++ IE ++ L+ + + PS+ V+ D +D+V G P D+ H G +
Sbjct: 337 LEVDIEFPKDGLIGTTEIEILRDILPSIPKVSVMDDTLIDSVR-----GVPGDISHFGGD 391
Query: 761 -------YGDETQDGY*NC 796
YGDET +G C
Sbjct: 392 ARYANEDYGDETYEGVPEC 410
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +2
Query: 563 NKSLEVLESMKIPIEVARENLVDVARTSLKTKVHPSLADVLTD 691
++SL++L+ + V+ ++ VD+ART ++ S ++V+ D
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIARTEYFITIY-SDSNVILD 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,972
Number of Sequences: 5004
Number of extensions: 67767
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -