Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C05
(894 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 126 6e-28
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 70 7e-11
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 69 1e-10
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 66 9e-10
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 1e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 56 2e-06
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 44 0.007
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 42 0.021
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 41 0.049
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 40 0.086
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 39 0.20
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.35
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 38 0.46
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 1.4
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 33 7.4
UniRef50_A6LZB2 Cluster: FMN-binding domain protein precursor; n... 33 7.4
UniRef50_P27223 Cluster: Regulatory protein E2; n=2; Human papil... 33 9.8
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 126 bits (305), Expect = 6e-28
Identities = 67/94 (71%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
Frame = +2
Query: 617 PWTSITKIDAQVRGGETRQDYKXTRRFPLESSLXALSCSDPAAYRIPVRLSP--LREAWR 790
P TSITKIDAQVRGGETRQDYK TRRFPLE+ AL P R+P P LREAWR
Sbjct: 22 PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFR-PC--RLPDTCPPFSLREAWR 78
Query: 791 FLIAHAVGISXRXXSXAPSWAVCTNPPFXPTXGP 892
FLIAHAVGIS R S APSWAVCTNPPF PT P
Sbjct: 79 FLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAP 112
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/72 (48%), Positives = 39/72 (54%)
Frame = +1
Query: 556 SKRPGTVKRPRCWRFSIGSAPLDEHHKNRRSSQRWRNPTGL*XYQAFPPGKLPRCALLFR 735
SK+ T R RFSIGSAPL K + + FP + P CALLFR
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL-EAPSCALLFR 60
Query: 736 PCRLPDTCPPFS 771
PCRLPDTCPPFS
Sbjct: 61 PCRLPDTCPPFS 72
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 70.1 bits (164), Expect = 7e-11
Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Frame = -3
Query: 880 RXERGVXAHSPAWSXRXTPX*DTYSVSYEKAPRFPKGRKADRYPVSG-RVGTGER-XEGA 707
R ERGV A+SPAWS R P DT SVSYEKAPRFPKG+KA++ VSG R G R EGA
Sbjct: 23 RAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ--VSGKRQGRNRRAHEGA 80
Query: 706 FQGETP 689
++P
Sbjct: 81 AGEKSP 86
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 69.3 bits (162), Expect = 1e-10
Identities = 43/83 (51%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 650 VRGGETRQDYKXTRRFPLESSLXALSCSDPAAYRIPVRLSPLREAWRFLIAHAV--GISX 823
VR GETRQD K ES ALSCS+PA RIPV P A ++H+ GIS
Sbjct: 23 VRSGETRQDLKIITVSD-ESLPLALSCSNPAVSRIPV--PPFSLAGSVALSHSSHSGISA 79
Query: 824 RXXSXAPSWAVCTNPPFXPTXGP 892
R S APSWAV NPPF PT P
Sbjct: 80 RCRSFAPSWAVSKNPPFSPTAAP 102
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 66.5 bits (155), Expect = 9e-10
Identities = 51/117 (43%), Positives = 57/117 (48%)
Frame = +1
Query: 400 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQEXTCEQKASKRPGTVK 579
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE---I 77
Query: 580 RPRCWRFSIGSAPLDEHHKNRRSSQRWRNPTGL*XYQAFPPGKLPRCALLFRPCRLP 750
RPR RFSIGSAPL K+ + FP P CALLF P LP
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPL-VAPSCALLFLPFGLP 133
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -1
Query: 564 PFAGLLLTCXFLRYPLILWITVLPPLSELIPLAAAERP 451
P LLTC F YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 364 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 531
CI + A AR AV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 55.6 bits (128), Expect = 2e-06
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +2
Query: 617 PWTSITKIDAQVRGGETRQDYKXTRRFPLESSLXAL 724
P TSITK DAQ+ GGETRQDYK TRRFPL + AL
Sbjct: 58 PLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCAL 93
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 43.6 bits (98), Expect = 0.007
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3
Query: 720 RSPVPTLPLTGYLSAFLPFG 779
RSPVPTLPLTGYLSAFLP G
Sbjct: 2 RSPVPTLPLTGYLSAFLPSG 21
Score = 40.3 bits (90), Expect = 0.065
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 766 FSPSGSVALSHSSRCRYLXS 825
F PSGSVALSHSSRCRYL S
Sbjct: 17 FLPSGSVALSHSSRCRYLSS 36
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 41.9 bits (94), Expect = 0.021
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3
Query: 483 HSKAVIRLSTESGDNAGXNM 542
HSKAVIRLSTESGDNAG NM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 40.7 bits (91), Expect = 0.049
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 587 VAGVFP*APPPWTSITKIDAQVRGGETRQDYKXTRRFPLESSLXAL 724
++ +FP PP T+ITKI Q + +T+ +YK T FPL+S +L
Sbjct: 65 LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSL 110
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 39.9 bits (89), Expect = 0.086
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = -3
Query: 892 RXXGRXERGVXAHSPAWSXRXTP 824
R GR ERGV AHSPAWS R TP
Sbjct: 19 RRSGRAERGVRAHSPAWSERPTP 41
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 38.7 bits (86), Expect = 0.20
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 167 DPXMIRYIDXFGQTTTKMQ 223
DP MIRYID FGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.35
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -2
Query: 434 ERGSGRAPNTQTAXPRALADSLMQ 363
+R + APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 37.5 bits (83), Expect = 0.46
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 892 RXXGRXERGVXAHSPAWSXRXTPX*DT 812
R R ERGV A+SPAWS R TP DT
Sbjct: 19 RRSSRAERGVLAYSPAWSERPTPSRDT 45
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.9 bits (79), Expect = 1.4
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 362 SALMNRPTXGXRRFAYW 412
+ALMNRPT G RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.5 bits (73), Expect = 7.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 573 GSWPFAGLLLTCXFLRYP---LILWITVLPPLSELIPLAAAERP 451
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A6LZB2 Cluster: FMN-binding domain protein precursor; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: FMN-binding
domain protein precursor - Clostridium beijerinckii
NCIMB 8052
Length = 364
Score = 33.5 bits (73), Expect = 7.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 209 TTKMQ*KKCFICEICD-AIALFVTIISCNKQVNNNNCIH 322
T K C C+ CD A + + I +CNK VN+ NCI+
Sbjct: 167 TIKRDANSCINCKRCDKACDMNIKISTCNKTVNSLNCIN 205
>UniRef50_P27223 Cluster: Regulatory protein E2; n=2; Human
papillomavirus - 32|Rep: Regulatory protein E2 - Human
papillomavirus type 42
Length = 398
Score = 33.1 bits (72), Expect = 9.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 608 APPPWTSITKIDAQVRG-GETRQDYKXTRRFPLESSLXA----LSCSDPAAYRIPVRLSP 772
+P P +S T DA++ G T+ + PL ++ C+D AY +P++ SP
Sbjct: 196 SPAPISSTTSTDAEIPSTGSTKLVQQVCTTNPLHTTTSIDNHHADCTDGTAYNVPIQTSP 255
Query: 773 LREAWR 790
R+ +R
Sbjct: 256 PRKRYR 261
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,923,365
Number of Sequences: 1657284
Number of extensions: 13706964
Number of successful extensions: 37556
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 35738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37513
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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