Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C05
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   1.6  
06_01_1042 + 8187536-8187616,8187713-8188315                           29   5.0  
07_03_0705 - 20846810-20848165                                         29   6.6  
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     28   8.7  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    28   8.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 714 RELSRGKRLVXL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 586
           R LSRGK L+   + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>06_01_1042 + 8187536-8187616,8187713-8188315
          Length = 227

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 809 QREL*ESATLPEGEK--GGQVSGKRQGRNRRAXRGSFPGGNAWY 684
           +RE    A  P GE+  G +  G R+ R RR  RGS   G +W+
Sbjct: 65  ERERAPLAARPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWW 108


>07_03_0705 - 20846810-20848165
          Length = 451

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 760 PPFSPSGSVALSH----SSRCRYLXSXXVVRSKLGCVHXPP 870
           PPF P+ S   S     SS C++L S  +  +  GCV+  P
Sbjct: 130 PPFQPASSSTFSKLPCASSLCQFLTSPYLTCNATGCVYYYP 170


>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 854 QPSLERTTYXEXRYLQREL*ESATLPEGEKGGQVSGKRQGRNRRAXRGSFPG 699
           +P+L        R L+R L  S   P  + GG + G R GR+    RG +PG
Sbjct: 15  RPALRSAVADGGRRLRRGL--SGQRPGHDGGGGLRGWRPGRDGGGLRGRWPG 64


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 595 RFSIGSAPLDEHHKNRRSSQRWRNP 669
           RFS  SAP+D+H + RR      NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 421 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--EXTCEQKASKRPGTV 576
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,164,469
Number of Sequences: 37544
Number of extensions: 412731
Number of successful extensions: 1191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)