Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C04
         (867 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q89745 Cluster: Protein Tat; n=171; Primate lentivirus ...    37   0.76 
UniRef50_P53164 Cluster: NADH pyrophosphatase; n=3; Saccharomyce...    36   1.3  
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ...    35   3.1  
UniRef50_P16786 Cluster: Uncharacterized protein UL49; n=7; Cyto...    34   4.1  
UniRef50_UPI0000D567EB Cluster: PREDICTED: similar to salvador h...    33   7.1  
UniRef50_Q91TN9 Cluster: T49; n=1; Tupaiid herpesvirus 1|Rep: T4...    33   7.1  
UniRef50_Q0ABR6 Cluster: Methyltransferase small; n=23; Gammapro...    33   7.1  
UniRef50_Q00023 Cluster: Cellulose-growth-specific protein precu...    33   7.1  
UniRef50_UPI00015B4E1E Cluster: PREDICTED: hypothetical protein;...    33   9.4  
UniRef50_Q8ILR5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q89745 Cluster: Protein Tat; n=171; Primate lentivirus
           group|Rep: Protein Tat - Human immunodeficiency virus
           type 2 (isolate EHO subtype B) (HIV-2)
          Length = 138

 Score = 36.7 bits (81), Expect = 0.76
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -3

Query: 826 NSRSGHCSSRRVGCPARSSSLDHRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSLNG 647
           NS SGH SS   G  A +  LD+R    L+ + R  +AC +     + SY C       G
Sbjct: 13  NSSSGHSSSTSEGV-ANTQGLDNRGEEILSQLYRPLKACSNTCYCKKCSYHCQLCFLKKG 71

Query: 646 MSLCFGKSAK 617
           + +C+ +S K
Sbjct: 72  LGICYERSRK 81


>UniRef50_P53164 Cluster: NADH pyrophosphatase; n=3; Saccharomyces
           cerevisiae|Rep: NADH pyrophosphatase - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 384

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 276 NVYSTFR*YLDTLEISHKFSKNTSKPFFEIKISIRIVCYSKNRKLNWNVRDS 121
           ++YS  + YLD L   +KF      P F ++   ++ C ++NR +  NVRD+
Sbjct: 161 SLYSQGKMYLDWLA-KYKFCPGCGSPLFPVEAGTKLQCSNENRNVYCNVRDA 211


>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
            n=473; cellular organisms|Rep: DNA-directed RNA
            polymerase II subunit RPB1 - Homo sapiens (Human)
          Length = 1970

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 613  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRT 756
            P SPTY  TS  +S     +  TS   S YS  +PGY+   SP Y  T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957


>UniRef50_P16786 Cluster: Uncharacterized protein UL49; n=7;
           Cytomegalovirus|Rep: Uncharacterized protein UL49 -
           Human cytomegalovirus (strain AD169) (HHV-5) (Human
           herpesvirus 5)
          Length = 570

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -3

Query: 832 LRNSRSGHCSSRRVGCPARSSSLDHRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSL 653
           LR    G      + C  R     H   RSL  V  C Q CGHC   G+    C ++  L
Sbjct: 339 LRGGLIGSVIDLPLWCLCRLKCERHLDARSLVAVV-CRQ-CGHCLNLGKEKLHCQQNFPL 396

Query: 652 NGMSLCFGKSAKLVLHN 602
           N M     +  K V+ N
Sbjct: 397 NSMFYYRDRQEKSVIFN 413


>UniRef50_UPI0000D567EB Cluster: PREDICTED: similar to salvador
           homolog 1; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to salvador homolog 1 - Tribolium castaneum
          Length = 404

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 598 SDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQS 738
           ++Y   +SP YQNT   H  + T   Y++T    YS    G   G+S
Sbjct: 155 NNYNSRSSPIYQNTDGAHKSQDTTPIYSNTGAERYSNPLQGMTYGES 201


>UniRef50_Q91TN9 Cluster: T49; n=1; Tupaiid herpesvirus 1|Rep: T49 -
           Tupaiid herpesvirus 1 (strain 1) (TuHV-1) (Herpesvirus
           tupaia (strain1))
          Length = 588

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -3

Query: 832 LRNSRSGHCSSRRVGCPARSSSLDHRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSL 653
           LR+   G      V C  ++    +R    L  V   N  CGHC   G+   +CA++  L
Sbjct: 369 LRHGLIGSVIELPVACHCKTKCERYRGAADLVAVVCRN--CGHCLNLGKEKLLCAQTFPL 426

Query: 652 NGMSLCFGKSAKLVLHN 602
           N +     +  K V+++
Sbjct: 427 NSLFYYRDRQEKSVIYS 443


>UniRef50_Q0ABR6 Cluster: Methyltransferase small; n=23;
           Gammaproteobacteria|Rep: Methyltransferase small -
           Alkalilimnicola ehrlichei (strain MLHE-1)
          Length = 403

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -1

Query: 822 PVAGTAQVVE*GVQLAQVPSTTGPAVAWRLSHVVTRR 712
           P A T +VVE GV+  QVP+TTG    W   H + R+
Sbjct: 180 PEAQTLEVVENGVRF-QVPATTGQKTGWYYDHRMNRQ 215


>UniRef50_Q00023 Cluster: Cellulose-growth-specific protein
           precursor; n=1; Agaricus bisporus|Rep:
           Cellulose-growth-specific protein precursor - Agaricus
           bisporus (Common mushroom)
          Length = 320

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 604 YAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGY--NVGQSPGYGRTGGRG 768
           Y  P  P Y +  +  S   TPH  T    S     TPG     GQ  G G TGG G
Sbjct: 246 YIVPGPPLYGSGGNGGSPTTTPHTTTPITTSPPPTSTPGTIPQYGQCGGIGWTGGTG 302


>UniRef50_UPI00015B4E1E Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 229

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 213 NTSKPFFEIKISIRIVCYSKNRKLNWNVRDSIFKFISRLRKSASDRPP 70
           NTSK F+++K  + IV  +K  K NW    S+ K I   + + S   P
Sbjct: 136 NTSKSFYKVKTDMIIVYLAKKLKKNWTCVTSVEKRIKDAKATPSVSDP 183


>UniRef50_Q8ILR5 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3597

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = -2

Query: 344  GVFGFSVRACFNYFSIHVIVDKIMCIRHFDNILTLSRYHTNFQKTPQNRFLKLK 183
            G+   S+  CFNY+S+++  + I+ + +FD  +TL      F K+ +N +L +K
Sbjct: 1578 GMCVMSICYCFNYYSLNIYTNNIILL-NFDKDVTLYEVIKEF-KSRENEYLLIK 1629


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,641,568
Number of Sequences: 1657284
Number of extensions: 14843762
Number of successful extensions: 44821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44782
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)