Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C04
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    29   0.86 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   1.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.6  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   6.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.0  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 613 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTP 717
           PA+P+ QN+ S H  +M PH      Q   SA TP
Sbjct: 460 PAAPSIQNSLSVHESEMPPHVTRDYTQPAASA-TP 493


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 613 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGY 747
           P+  + Q T+ F+S   +PH       +NYSA TP +N   + G+
Sbjct: 230 PSLQSIQQTNGFYSGHNSPH-------TNYSASTPSFNHFNAAGH 267


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 613  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRT 756
            P+SP+Y  TS  +S   T   Y+ T  S YS  +P Y+   SP Y  T
Sbjct: 1573 PSSPSYSPTSPSYSP--TSPSYSPTSPS-YSPTSPSYS-ATSPSYSPT 1616


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = -2

Query: 362  HGLVNLGVF-GFSVRACFNYFSIHVIVDKIMCI--------RHFDNILTLSRYHTNFQKT 210
            HG++ +  F G +V +  + FSIHVI   +  +        + FD+ L +S +   F   
Sbjct: 895  HGVMPIFTFMGSTVLSRDDAFSIHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHI 954

Query: 209  PQNRFLKL 186
            PQ+R L+L
Sbjct: 955  PQHRRLRL 962


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 8/40 (20%), Positives = 26/40 (65%)
 Frame = +3

Query: 189 FQKTVLRCFLKICVISRECQDIIEMSNTHYFVNDDMYRKV 308
           FQ+T+L+C L+  ++S++ + ++ + +      + ++++V
Sbjct: 27  FQETMLQCILEAVIVSKDAKQVLSLLHELKLFENFLWQRV 66


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -2

Query: 305 FSIHVIVDKIMCIRHFDNILTLSRYHTNFQKTPQNRFLKLKFRFESYVIRKTENLIGMLE 126
           FS+  +V KI   +      T S+Y  +F +TP N  L+L F        K ++L  +L+
Sbjct: 54  FSLRNMVKKITADQDQFMSYTTSKYKLHFYETPTN--LRLIF----ITNPKIDSLTHVLQ 107

Query: 125 ILYLNLSPDFV 93
            +Y  L  +FV
Sbjct: 108 QIYTTLYVEFV 118


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 654  REDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRR 800
            RE   A  +E    +L+C HA  +   +++L Q+ W      AGH  RR
Sbjct: 1316 REAAGAGNFEITMGKLRCLHALGEWDRLSQLAQENWI----HAGHDARR 1360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,341
Number of Sequences: 5004
Number of extensions: 62705
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)