Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C04
(867 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-2404|AAF48609.1| 511|Drosophila melanogaster CG9968-PB... 33 0.39
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 32 0.89
X95178-1|CAA64485.1| 693|Drosophila melanogaster caupolican hom... 31 2.1
BT021246-1|AAX33394.1| 693|Drosophila melanogaster RE64213p pro... 31 2.1
BT015986-1|AAV36871.1| 693|Drosophila melanogaster RE59515p pro... 31 2.1
AY122206-1|AAM52718.1| 325|Drosophila melanogaster LP03275p pro... 31 2.1
AE014296-2165|AAF49895.1| 693|Drosophila melanogaster CG10605-P... 31 2.1
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 30 3.6
BT022156-1|AAY51551.1| 427|Drosophila melanogaster IP01408p pro... 30 3.6
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 30 3.6
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 30 3.6
AE013599-4016|AAF47315.2| 427|Drosophila melanogaster CG3388-PA... 30 3.6
AY089568-1|AAL90306.1| 487|Drosophila melanogaster RE04404p pro... 30 4.7
AE013599-162|AAF57270.1| 504|Drosophila melanogaster CG17994-PA... 30 4.7
AY118695-1|AAM50555.1| 446|Drosophila melanogaster AT18493p pro... 29 8.3
AE014296-1967|AAF50051.1| 566|Drosophila melanogaster CG11711-P... 29 8.3
AE014296-419|AAF47618.1| 446|Drosophila melanogaster CG15878-PA... 29 8.3
>AE014298-2404|AAF48609.1| 511|Drosophila melanogaster CG9968-PB,
isoform B protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.39
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 598 SDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRG 768
+ YA PA YQ S +S YT + + Y A GY G G+G+ G G
Sbjct: 97 AQYAPPAHNHYQQPSVSNSPYPADRGYTPAMTAGYDA---GYGYGNGQGHGQGHGHG 150
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 32.3 bits (70), Expect = 0.89
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 595 SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYG-----RTG 759
SS P SPTY T+ +S T Y+ T S+YS +P Y+ SP + R G
Sbjct: 1837 SSTKYSPTSPTYTPTARNYSP--TSPMYSPTAPSHYSPTSPAYS-PSSPTFEESEDVRKG 1893
Query: 760 GRG 768
GRG
Sbjct: 1894 GRG 1896
>X95178-1|CAA64485.1| 693|Drosophila melanogaster caupolican
homeoprotein protein.
Length = 693
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 592 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRG 768
++S +S ++SS HS +TP S V YS GY G S G+G G G
Sbjct: 607 LNSSGGSSSSSGSSHSSSMHS--VTPVTVASMVNILYSNTDSGYGHGHSHGHGHGHGHG 663
>BT021246-1|AAX33394.1| 693|Drosophila melanogaster RE64213p
protein.
Length = 693
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 592 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRG 768
++S +S ++SS HS +TP S V YS GY G S G+G G G
Sbjct: 607 LNSSGGSSSSSGSSHSSSMHS--VTPVTVASMVNILYSNTDSGYGHGHSHGHGHGHGHG 663
>BT015986-1|AAV36871.1| 693|Drosophila melanogaster RE59515p
protein.
Length = 693
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 592 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRG 768
++S +S ++SS HS +TP S V YS GY G S G+G G G
Sbjct: 607 LNSSGGSSSSSGSSHSSSMHS--VTPVTVASMVNILYSNTDSGYGHGHSHGHGHGHGHG 663
>AY122206-1|AAM52718.1| 325|Drosophila melanogaster LP03275p
protein.
Length = 325
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 592 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRG 768
++S +S ++SS HS +TP S V YS GY G S G+G G G
Sbjct: 239 LNSSGGSSSSSGSSHSSSMHS--VTPVTVASMVNILYSNTDSGYGHGHSHGHGHGHGHG 295
>AE014296-2165|AAF49895.1| 693|Drosophila melanogaster CG10605-PA
protein.
Length = 693
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 592 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRG 768
++S +S ++SS HS +TP S V YS GY G S G+G G G
Sbjct: 607 LNSSGGSSSSSGSSHSSSMHS--VTPVTVASMVNILYSNTDSGYGHGHSHGHGHGHGHG 663
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 595 SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYN 726
SS P SPTY T+ +S T Y+ T S+YS +P Y+
Sbjct: 356 SSTKYSPTSPTYTPTARNYSP--TSPMYSPTAPSHYSPTSPAYS 397
>BT022156-1|AAY51551.1| 427|Drosophila melanogaster IP01408p
protein.
Length = 427
Score = 30.3 bits (65), Expect = 3.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 577 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYG 750
N ++ S + P+S Y+N +++ + +ST ++ +AH+P Q PG G
Sbjct: 272 NMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTG 329
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 595 SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYN 726
SS P SPTY T+ +S T Y+ T S+YS +P Y+
Sbjct: 1377 SSTKYSPTSPTYTPTARNYSP--TSPMYSPTAPSHYSPTSPAYS 1418
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 595 SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYN 726
SS P SPTY T+ +S T Y+ T S+YS +P Y+
Sbjct: 1835 SSTKYSPTSPTYTPTARNYSP--TSPMYSPTAPSHYSPTSPAYS 1876
>AE013599-4016|AAF47315.2| 427|Drosophila melanogaster CG3388-PA
protein.
Length = 427
Score = 30.3 bits (65), Expect = 3.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 577 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYG 750
N ++ S + P+S Y+N +++ + +ST ++ +AH+P Q PG G
Sbjct: 272 NMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTG 329
>AY089568-1|AAL90306.1| 487|Drosophila melanogaster RE04404p
protein.
Length = 487
Score = 29.9 bits (64), Expect = 4.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 693 KQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQCPLR 821
+Q+ W +R RLR+D+ ++ER H ++R +C R
Sbjct: 384 EQVHHEEHWRERQQEERLRRDQLREDIERKRHQSQRFVECRQR 426
>AE013599-162|AAF57270.1| 504|Drosophila melanogaster CG17994-PA
protein.
Length = 504
Score = 29.9 bits (64), Expect = 4.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 693 KQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQCPLR 821
+Q+ W +R RLR+D+ ++ER H ++R +C R
Sbjct: 401 EQVHHEEHWRERQQEERLRRDQLREDIERKRHQSQRFVECRQR 443
>AY118695-1|AAM50555.1| 446|Drosophila melanogaster AT18493p
protein.
Length = 446
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 760 HRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSLNGMSLCFGKS 623
H+ C++LAI P + CG G YS + ESS M CF ++
Sbjct: 188 HKQCKALAITP--DPMCGLFLHMGEYSMLMLESS--EDMIGCFTRA 229
>AE014296-1967|AAF50051.1| 566|Drosophila melanogaster CG11711-PD,
isoform D protein.
Length = 566
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 613 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTGGRGN 771
P +PT S + +T S H PG V + G+ GG+GN
Sbjct: 39 PQTPTASTPRPSSSHSSLSSTFAATFLHASSRHIPGRAVPRQNANGQNGGKGN 91
>AE014296-419|AAF47618.1| 446|Drosophila melanogaster CG15878-PA
protein.
Length = 446
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 760 HRSCRSLAIVPRCNQACGHCSCFGRYSYICAESSSLNGMSLCFGKS 623
H+ C++LAI P + CG G YS + ESS M CF ++
Sbjct: 188 HKQCKALAITP--DPMCGLFLHMGEYSMLMLESS--EDMIGCFTRA 229
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,784,149
Number of Sequences: 53049
Number of extensions: 696242
Number of successful extensions: 2447
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2445
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4188579408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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