Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C04
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 33 0.26
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 33 0.26
AF040647-10|AAB94993.1| 124|Caenorhabditis elegans Hypothetical... 31 1.4
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 30 1.9
AF003130-18|AAO38640.1| 441|Caenorhabditis elegans Prion-like-(... 30 1.9
AF003130-17|AAB54127.1| 470|Caenorhabditis elegans Prion-like-(... 30 1.9
AF003130-16|AAK68879.1| 457|Caenorhabditis elegans Prion-like-(... 30 1.9
AF003130-15|AAM45365.1| 465|Caenorhabditis elegans Prion-like-(... 30 1.9
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 30 2.5
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81553-3|CAB04493.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 28 9.9
Z68303-8|CAA92640.2| 273|Caenorhabditis elegans Hypothetical pr... 28 9.9
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +1
Query: 580 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTG 759
G + SS P+SPTY TS +S T +Y+ T YS +P Y SP Y T
Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSP--TSPQYSPT-SPQYSPSSPTY-TPSSPTYNPTS 1769
Query: 760 GRG 768
RG
Sbjct: 1770 PRG 1772
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 586 RNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSP 741
R SS P SPTY TS ++ + TS + + PG + SP
Sbjct: 1771 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1822
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +1
Query: 580 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTG 759
G + SS P+SPTY TS +S T +Y+ T YS +P Y SP Y T
Sbjct: 1721 GGYSPSSPKYSPSSPTYSPTSPSYSP--TSPQYSPT-SPQYSPSSPTY-TPSSPTYNPTS 1776
Query: 760 GRG 768
RG
Sbjct: 1777 PRG 1779
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 586 RNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSP 741
R SS P SPTY TS ++ + TS + + PG + SP
Sbjct: 1778 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1829
>AF040647-10|AAB94993.1| 124|Caenorhabditis elegans Hypothetical
protein F54D12.2 protein.
Length = 124
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 323 RACFNYFSIHVIVDKIMCIRHFDNILTLSRYHTNFQKTPQ 204
++ NY ++ + DK+ C+++F ++ T S +T Q T Q
Sbjct: 68 KSLLNYIAVKYVYDKVSCLKNFASLFTSSTLYT--QSTDQ 105
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 547 NSGCLTS*DGPVKCPLPRGDPVLPGEXXXXXXXXXXXXXXLTRAPPG 407
+SGC+T GP+ P P G P +PG + PPG
Sbjct: 135 SSGCITCPAGPMGSPGPDGPPGVPGATGNPGSLGESSLGAGSPGPPG 181
>AF003130-18|AAO38640.1| 441|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
isoform d protein.
Length = 441
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 41 DFLSLLYRAIGGRSLALL-RSREINLN-IESLTFQLSFRFF 157
DFL LLYR I ++ L+ R ++LN I+ + FQLS + +
Sbjct: 370 DFLMLLYRVIDESTVCLMAHERNMSLNMIDRVAFQLSMQCY 410
>AF003130-17|AAB54127.1| 470|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
isoform a protein.
Length = 470
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 41 DFLSLLYRAIGGRSLALL-RSREINLN-IESLTFQLSFRFF 157
DFL LLYR I ++ L+ R ++LN I+ + FQLS + +
Sbjct: 399 DFLMLLYRVIDESTVCLMAHERNMSLNMIDRVAFQLSMQCY 439
>AF003130-16|AAK68879.1| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
isoform b protein.
Length = 457
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 41 DFLSLLYRAIGGRSLALL-RSREINLN-IESLTFQLSFRFF 157
DFL LLYR I ++ L+ R ++LN I+ + FQLS + +
Sbjct: 386 DFLMLLYRVIDESTVCLMAHERNMSLNMIDRVAFQLSMQCY 426
>AF003130-15|AAM45365.1| 465|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
isoform c protein.
Length = 465
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 41 DFLSLLYRAIGGRSLALL-RSREINLN-IESLTFQLSFRFF 157
DFL LLYR I ++ L+ R ++LN I+ + FQLS + +
Sbjct: 394 DFLMLLYRVIDESTVCLMAHERNMSLNMIDRVAFQLSMQCY 434
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 592 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNY--SAHTPGYNVGQSP 741
+ + Y PA+ T N+S + + +P Y + QS+Y SA P ++ +P
Sbjct: 391 VPTSYYPPAASTASNSSGYQAPYYSPPSYPTQQQSSYVPSAVPPMFSATSAP 442
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 580 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTG 759
GS SS Y+ +P + + TP T Y + TP Y+ G++P YG G
Sbjct: 787 GSGGGSSFYSSSKTPMRDSGKTPMYGSKTPMYGAQTPM--YGSMTPAYDGGRTPAYGE-G 843
Query: 760 GR 765
GR
Sbjct: 844 GR 845
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 580 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRTG 759
GS SS Y+ +P + + TP T Y + TP Y+ G++P YG G
Sbjct: 787 GSGGGSSFYSSSKTPMRDSGKTPMYGSKTPMYGAQTPM--YGSMTPAYDGGRTPAYGE-G 843
Query: 760 GR 765
GR
Sbjct: 844 GR 845
>Z81553-3|CAB04493.1| 136|Caenorhabditis elegans Hypothetical
protein F56H6.3 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +1
Query: 574 INGSRNISSDYAKPASPTYQNTSSFHSEKMTPH--------KYTSTVQSNYSAHTPGYN 726
+ GS +++ PAS S HS +M ++ +T +Y AHTP Y+
Sbjct: 63 LTGSHEVAAKAPPPASAVAAPASRRHSRRMYSEVRNRERVGRFRTTTSPHYVAHTPSYS 121
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 751 CRSLAIVPRCNQACGHCSCFGRYSYICAESSSLNGMSLC 635
C+ IVP ACGH CF IC + +N M C
Sbjct: 15 CQCKMIVPTTIPACGHKFCF-----ICLKGVYMNDMGGC 48
>Z68303-8|CAA92640.2| 273|Caenorhabditis elegans Hypothetical
protein ZK809.7 protein.
Length = 273
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 775 SSSLDHRSCRSLAIVPRCNQACGHCSCF 692
SS ++ C +++P Q CGH +C+
Sbjct: 211 SSDIECVVCDKPSVIPMVGQKCGHVACY 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,009,346
Number of Sequences: 27780
Number of extensions: 362876
Number of successful extensions: 1284
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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