Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C03
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.34 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.78 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 559  PPPPPPPP 582
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 562  PPPPPPPXXXG 594
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 483  PPPPPXPP 460
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 565  PPPPPPXXXGG 597
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 553  GXPPPPPPPP 582
            G P PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 559 PPPPPPPPXXXG 594
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 562 PPPPPPPXXXGG 597
           P PPPPP    G
Sbjct: 341 PAPPPPPPSSSG 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 664 PPPGGXXGGXPPPPP 620
           PPPGG  G  P   P
Sbjct: 46  PPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.154    0.531 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,762
Number of Sequences: 438
Number of extensions: 7773
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)