Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C02
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1017 + 21747044-21748051 32 0.70
03_06_0519 - 34481751-34482722 31 1.6
10_08_0271 - 16382655-16384451 30 2.8
03_01_0280 + 2152000-2153510,2153633-2153732 30 2.8
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 30 2.8
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 3.8
03_02_1016 + 13228113-13228964 29 3.8
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.6
03_05_0907 + 28678909-28679253 29 6.6
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 6.6
01_05_0230 + 19543410-19543722,19544165-19544238 29 6.6
01_02_0108 - 11200964-11201338 29 6.6
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 28 8.7
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 8.7
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 28 8.7
>04_03_1017 + 21747044-21748051
Length = 335
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +2
Query: 149 AGCSAPPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKRPTALQXATNGQST 328
+ C PP +S P+R PD P +RA S S R A T +S
Sbjct: 53 SSCCPPPSPDYTPASPPHRRAASPDYTPESPPRRAASPDYSPASPPRRAASPDYT-PESP 111
Query: 329 PKESPEPQIQQEAP 370
P+ + P E+P
Sbjct: 112 PRRAASPDYSPESP 125
>03_06_0519 - 34481751-34482722
Length = 323
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 152 GCSAPPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRK 286
G APP + T +T RS R A P H A+ S+T+ S +
Sbjct: 28 GAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>10_08_0271 - 16382655-16384451
Length = 598
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Frame = +1
Query: 139 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVP----------PSATSTFSHGQGDEPKA 288
R +S V R GGG T+ P PP G A P PS +T H + A
Sbjct: 64 RKASPVDRGGGGGGTSFSGHSPSPPDAGGSAKPESPHDSGVKAPSELTTVEHTKQPSEPA 123
Query: 289 TNGTSXSD 312
+ GT D
Sbjct: 124 STGTESDD 131
>03_01_0280 + 2152000-2153510,2153633-2153732
Length = 536
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 571 YVSRLS---IS*GTLPVALLKFCNCDQRCSXQCVFPTLPFEMINVVLSASDARIGCIRS* 741
+VSR S + LP+ L F +RC+ Q VF L F+M ++ S D GC+
Sbjct: 146 FVSRCSSDKVENALLPL-LSHFAGTGERCNLQDVFMRLTFDMSTMLASGEDP--GCLAIS 202
Query: 742 FNQLKISVTRA 774
K+ RA
Sbjct: 203 LPMPKVPFVRA 213
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 136 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSH 264
A L +R RPP GG T + + P+ P AT F H
Sbjct: 171 ASLYTRAPRPPRGGKTYLLTAAPQCPYPDASLAAALATGLFDH 213
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Frame = +1
Query: 157 LRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST-FSHGQGDEPKATNGTSXSDQRSVYS* 333
L PP GH+ D PP A P+ATS S G + SD V
Sbjct: 8 LSPPATGHSGHGDLNSPPPAAPAGASSPAATSAQCSSGSSSGSQEKVDWDFSDDDEVVES 67
Query: 334 GESGATDSAGGPXLQQSALP 393
S A AG A P
Sbjct: 68 PPSPARQMAGQASAAHEATP 87
>03_02_1016 + 13228113-13228964
Length = 283
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 132 RSSSIKQGAPPPRWWSH*HLRLRTGATEDRTPCRSTKRNE---HFQPRTRRRAESDQRH 299
R++ + + APPP +H H LR GA P +T+R+ F PRT +D RH
Sbjct: 117 RNTMVLRPAPPPAM-NHPHPLLRGGAVTGAAPPVTTRRSSGTGFFLPRT---TAADPRH 171
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -1
Query: 239 GGTARRPVLGGSGSESKMLV*PPPGGRSTLLDR 141
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGG-GGALARPPGGGRGGALGR 171
>03_05_0907 + 28678909-28679253
Length = 114
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 236 GTARRPVLGGSGSESKMLV*PPPGGRSTLLDRRAPSLRPTLKGV 105
G A RP+L GS + + P G ++L RR + R L+GV
Sbjct: 49 GAAARPLLHGSAAAANGASAPGNAGAGSVLRRRPVARRVLLRGV 92
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 196 SEPEPPRTGRRAVPPSATSTFSHGQ--GDEPKATNGTSXSD 312
S P PP + VPPS T+ + GQ EP+ G + +D
Sbjct: 94 SPPPPPPSSPPPVPPSPTAAPTTGQSWNSEPERKEGATATD 134
>01_05_0230 + 19543410-19543722,19544165-19544238
Length = 128
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 202 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSV 324
P PP T A PP+ S+ G+ E + +N S +R V
Sbjct: 63 PAPPSTPPPASPPTPLSSTESGRRGEGRGSNAAGGSRRRRV 103
>01_02_0108 - 11200964-11201338
Length = 124
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 97 MTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 255
M ST NVGL+ A +S ++RP G +F P R G AV S +T
Sbjct: 1 MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF---PRVGRGGFAAVRASGPAT 50
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 196 SEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS 330
S PEPP T + PPS S D PK T G+S + + V+S
Sbjct: 550 SLPEPPPTPTLSQPPSIPSA---DGADIPKFTFGSSSTTGKLVFS 591
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 205 EPPRTGRRAVPPSATSTFSHGQGDEPKATN 294
+ P+ G A P A STF H Q P ATN
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATN 613
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 242 LGGTARRPVLGGSGSESKMLV*PPPGGRSTLLDRRAPSLRPT 117
LG TAR P S + + +V PPP RST R A + RPT
Sbjct: 124 LGRTARSP----SPALGRNIVEPPPTVRSTSAGRPAVASRPT 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,653
Number of Sequences: 37544
Number of extensions: 429233
Number of successful extensions: 1470
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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