Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C02
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    41   0.001
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    26   2.3  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   4.4  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   4.4  
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   7.7  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   7.7  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    28   7.7  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/111 (27%), Positives = 48/111 (43%)
 Frame = +1

Query: 79  DK*KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF 258
           +K KN   +  FN   N G + +     P     T++ ++   PP+TGR+ + P+  + F
Sbjct: 287 NKYKNNYKAPEFNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPF 344

Query: 259 SHGQGDEPKATNGTSXSDQRSVYS*GESGATDSAGGPXLQQSALPKPTVQS 411
              Q      TNG S  D    +  G  G     G P   Q+ +P P +Q+
Sbjct: 345 ---QNAPAPFTNGPS-DDVNRPFQTGPPGNLGRNGPPPF-QAGVPPPVIQN 390


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
            F57C7.1b protein.
          Length = 1087

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 163  PPGGGHTNIFDS-EPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS*GE 339
            PP   H    DS  P   RTG ++    + S  S    DEP  +N      +R++   G 
Sbjct: 970  PPPLQHRMRSDSPSPSASRTGNQSSDSDSASDDS--SDDEPSRSNSNVAGPRRALELSGN 1027

Query: 340  SGATDSAGGPXLQQSALPKPTVQS 411
            S +  +  GP   Q A+ +P+ +S
Sbjct: 1028 SSSASTPAGPSKAQPAVVRPSSKS 1051


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 163  PPGGGHTNIFDS-EPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS*GE 339
            PP   H    DS  P   RTG ++    + S  S    DEP  +N      +R++   G 
Sbjct: 970  PPPLQHRMRSDSPSPSASRTGNQSSDSDSASDDS--SDDEPSRSNSNVAGPRRALELSGN 1027

Query: 340  SGATDSAGGPXLQQSALPKPTVQS 411
            S +  +  GP   Q A+ +P+ +S
Sbjct: 1028 SSSASTPAGPSKAQPAVVRPSSKS 1051


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 25.8 bits (54), Expect(2) = 2.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 208 PPRTGRRAVPPSATSTFSHGQGDE 279
           PP T R + PPSATS+      DE
Sbjct: 66  PPGTVRASFPPSATSSVVSDGSDE 89



 Score = 22.6 bits (46), Expect(2) = 2.3
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +1

Query: 88  KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTG 222
           K K T  P     ND    S+R   PP    T +      PPR G
Sbjct: 14  KKKTTPAPAAPPPND----SNRTTPPPSSEETAVVPEPVMPPRKG 54


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 164 PPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRK-RPTA 298
           PP +V +T+STP+     P  +P H      + T   ++R  RPTA
Sbjct: 650 PPAIVHMTASTPS-GKNPPTYIPLHPETSQSTPTPTTSARSTRPTA 694


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 LRTGATEDRTPCRSTKRNEHFQPRTRRRAESDQR 296
           L  G TE+ T   +T RNE  + + R++ E + R
Sbjct: 619 LPLGVTEETTTTTTTTRNEEIERKRRKKKEEEDR 652


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 LRTGATEDRTPCRSTKRNEHFQPRTRRRAESDQR 296
           L  G TE+ T   +T RNE  + + R++ E + R
Sbjct: 841 LPLGVTEETTTTTTTTRNEEIERKRRKKKEEEDR 874


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 223 RRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS*GESGATDSAGGPXLQQSALPKP 399
           RR+ PP   S  S+     PK    +S     +V S       DSA    L ++A PKP
Sbjct: 264 RRSPPPKTPSEASYAS-TRPKTERSSSHKSASTVTSSATITTLDSAKRKPLAKNASPKP 321


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 223 RRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS*GESGATDSAGGPXLQQSALPKP 399
           RR+ PP   S  S+     PK    +S     +V S       DSA    L ++A PKP
Sbjct: 260 RRSPPPKTPSEASYAS-TRPKTERSSSHKSASTVTSSATITTLDSAKRKPLAKNASPKP 317


>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 152 GCSAPPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKRPTALQXATNGQSTP 331
           G +A P +  L S+TPNR++    A+    AQ+ + A       ++PT +Q A NG ++ 
Sbjct: 12  GVTAVPPIFPLPSTTPNRNNNNELAM---LAQKQIVA---GLLLQQPTIVQAAVNGTNSQ 65

Query: 332 K 334
           K
Sbjct: 66  K 66


>Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical
           protein F39D8.1a protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 197 PNRSHRGPDAVPFHQAQRALSATDKETSRKRPTALQXATNGQSTPKESPEPQIQQEA 367
           P+ S+R P  VP    Q   SA    T+  + + +    NGQ     S +PQ QQ+A
Sbjct: 48  PSTSNRSPCCVPTSNVQTIQSAR-AFTNGAQGSQVIMYYNGQRVVANSQDPQQQQQA 103


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform a
            protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 179  TLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKRPTALQXATNGQ-STPKESPEPQI 355
            ++ S++PN   +  +  P +++ R  S +D   SR  PTA    ++   S  K+S E  +
Sbjct: 941  SMRSTSPNDRRKSRETPPGNRSMRRTSPSDGRKSRDTPTASSSMSSSTLSYCKKSKETPM 1000

Query: 356  QQE 364
              E
Sbjct: 1001 SYE 1003


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 179  TLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKRPTALQXATNGQ-STPKESPEPQI 355
            ++ S++PN   +  +  P +++ R  S +D   SR  PTA    ++   S  K+S E  +
Sbjct: 941  SMRSTSPNDRRKSRETPPGNRSMRRTSPSDGRKSRDTPTASSSMSSSTLSYCKKSKETPM 1000

Query: 356  QQE 364
              E
Sbjct: 1001 SYE 1003


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 149 AGCSAPPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKE-TSRKRPTALQXATNGQS 325
           AG ++     + TS+  + SH    + P HQ   A SA  ++ TS   P     +     
Sbjct: 46  AGATSSSAASSSTSTPSSSSHHKKSSPPHHQKSAAPSAPPRDVTSAHAPPPPASSAPIVG 105

Query: 326 TPKESPEPQ 352
            P++   PQ
Sbjct: 106 APRQGATPQ 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,422
Number of Sequences: 27780
Number of extensions: 336422
Number of successful extensions: 1111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)